BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0164900 Os01g0164900|AK064137
         (481 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G00020.2  | chr4:2895-10364 REVERSE LENGTH=1188                 59   6e-09
AT5G01630.1  | chr5:235117-240911 REVERSE LENGTH=1156              52   7e-07

>AT4G00020.2 | chr4:2895-10364 REVERSE LENGTH=1188
          Length = 1187

 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 63/123 (51%), Gaps = 19/123 (15%)

Query: 69  VPSMADLFNQALDKLVAADGMAEAIEDSGKGAVFCTGLGGSVAVSERAVERAKALVGEVA 128
           +PSMADL  Q   KL+A +   EA+   G+  +F TGLG SV + E ++ +AK+++ E  
Sbjct: 42  LPSMADLLLQGCSKLIARE---EAMP--GEIPMFRTGLGKSVVLKESSIAKAKSILAE-- 94

Query: 129 EEISNERRQPFGDGSNLECGLGESNVSFKGGVHKDSLSPMFQTGSGKMVSLSKGSIQKAR 188
                  +  + D  N  C + +        V      PMF+T SGK V L + SI KA 
Sbjct: 95  -------KVTYSDLRNTNCSIPQMR-----QVDTAETLPMFRTASGKSVPLKESSIAKAM 142

Query: 189 AVL 191
           ++L
Sbjct: 143 SIL 145




 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 7/81 (8%)

Query: 403 GHLPLFQTGLGRSISVSKGSIKRASALL-------EPRNITKELEDEAHSDDGCATPMFK 455
           G +P+F+TGLG+S+ + + SI +A ++L       + RN    +      D     PMF+
Sbjct: 65  GEIPMFRTGLGKSVVLKESSIAKAKSILAEKVTYSDLRNTNCSIPQMRQVDTAETLPMFR 124

Query: 456 TGSGRSITASENSRKKAHVVL 476
           T SG+S+   E+S  KA  +L
Sbjct: 125 TASGKSVPLKESSIAKAMSIL 145



>AT5G01630.1 | chr5:235117-240911 REVERSE LENGTH=1156
          Length = 1155

 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 19/123 (15%)

Query: 69  VPSMADLFNQALDKLVAADGMAEAIEDSGKGAVFCTGLGGSVAVSERAVERAKALVGEVA 128
           +PSMADL  Q   KL+  +   E++   G+  +F TGLG SV + E ++ +AK++   +A
Sbjct: 42  LPSMADLLLQGCSKLIERE---ESMP--GEIPMFRTGLGKSVVLKESSIAKAKSI---LA 93

Query: 129 EEISNERRQPFGDGSNLECGLGESNVSFKGGVHKDSLSPMFQTGSGKMVSLSKGSIQKAR 188
           E ++      + D  N  C + ++       V      PMF+T  GK V L + SI K  
Sbjct: 94  ENVA------YSDLQNTNCSIPQTR-----QVDTAETMPMFRTALGKTVPLKESSIAKPL 142

Query: 189 AVL 191
           ++L
Sbjct: 143 SIL 145



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.310    0.129    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,492,555
Number of extensions: 373873
Number of successful extensions: 742
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 738
Number of HSP's successfully gapped: 3
Length of query: 481
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 379
Effective length of database: 8,310,137
Effective search space: 3149541923
Effective search space used: 3149541923
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 114 (48.5 bits)