Os01g0120400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Alanyl-tRNA synthetase, class IIc family protein.
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Os01g0120400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Alanyl-tRNA synthetase, class IIc family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.16 | 0.301 | 10.4 | -0.735 | 0.554 | 0.818 | 0.22 | -2.77 | -0.256 | 13.2 | 21.4 | 1750 | -- | -- |
| 46.89 | 0.319 | 10.3 | -0.0923 | 0.557 | 0.743 | 0.283 | -- | -0.125 | 13.5 | 16.49 | 7599 | -- | -- |
| 41.32 | 0.299 | 10.4 | -0.755 | 0.556 | 0.829 | -- | -2.89 | -0.261 | 13.3 | 21.67 | 1770 | -- | -- |
| 46.08 | 0.316 | 10.3 | 0.0488 | 0.68 | 0.913 | -- | -- | -0.0366 | 13.6 | 12.95 | 1144 | -- | -- |
| 52.68 | 0.34 | 10.3 | -0.184 | -- | 1.07 | -- | -1.8 | -0.132 | -- | 21.67 | 1770 | -- | -- |
| 58.99 | 0.36 | 10.3 | 0.307 | 0.557 | -- | 0.17 | -- | 0.116 | 13.7 | -- | -- | -- | -- |
| 59.1 | 0.36 | 10.3 | 0.312 | 0.558 | -- | -- | -- | 0.117 | 13.7 | -- | -- | -- | -- |
| 53.59 | 0.342 | 10.3 | 0.0529 | -- | 1.3 | -- | -- | -0.0685 | -- | 12.95 | 1144 | -- | -- |
| 46.12 | 0.316 | 10.3 | -- | 0.679 | 0.931 | -- | -- | -0.0479 | 13.5 | 13.23 | 1140 | -- | -- |
| 78.04 | 0.413 | 10.3 | 0.29 | -- | -- | -- | -- | 0.105 | -- | -- | -- | -- | -- |
| 61.67 | 0.367 | 10.3 | -- | 0.553 | -- | -- | -- | 0.0826 | 13.7 | -- | -- | -- | -- |
| 53.66 | 0.342 | 10.3 | -- | -- | 1.32 | -- | -- | -0.0762 | -- | 12.95 | 1144 | -- | -- |
| 80.25 | 0.418 | 10.3 | -- | -- | -- | -- | -- | 0.0727 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.61 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 4 |
| 7 | 40.75 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 6 |
| 35 | 41.15 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 55 | 41.33 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 130 | 41.57 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 20 |
| 131 | 41.59 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 150 | 41.65 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 7 |
| 163 | 41.69 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 166 | 41.70 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 7 |
| 169 | 41.70 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 170 | 41.71 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 8 |
| 171 | 41.71 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 200 | 41.79 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 292 | 42.02 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 296 | 42.02 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 8 |
| 302 | 42.03 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 5 |
| 309 | 42.04 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 329 | 42.08 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 18 |
| 351 | 42.14 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 22 |
| 385 | 42.20 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 21 |
| 430 | 42.29 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 13 |
| 463 | 42.34 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 489 | 42.37 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 508 | 42.40 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 509 | 42.40 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 515 | 42.41 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 546 | 42.44 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 13 |
| 690 | 42.63 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 744 | 42.68 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 912 | 42.89 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 941 | 42.93 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 950 | 42.94 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 958 | 42.95 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 979 | 42.97 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 10 |
| 986 | 42.98 | temperature | 25 | 1440 | > th | dose independent | sin | 18 | NA |
| 988 | 42.98 | temperature | 25 | 1440 | < th | dose independent | sin | 18 | NA |