BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0120400 Os01g0120400|AK104753
         (264 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0120400  Alanyl-tRNA synthetase, class IIc family protein    515   e-146

>Os01g0120400 Alanyl-tRNA synthetase, class IIc family protein
          Length = 264

 Score =  515 bits (1327), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 252/264 (95%), Positives = 252/264 (95%)

Query: 1   MGTEAAAPARAMGPTKLAYFDDMWALSSTATVVSLLQEEGGRRAVLVDSTVFYPQGGGQP 60
           MGTEAAAPARAMGPTKLAYFDDMWALSSTATVVSLLQEEGGRRAVLVDSTVFYPQGGGQP
Sbjct: 1   MGTEAAAPARAMGPTKLAYFDDMWALSSTATVVSLLQEEGGRRAVLVDSTVFYPQGGGQP 60

Query: 61  ADTGVISAGGGTRFIVDDVRMKDGVVFHYGRFEDAGDGCNSGFSEGQSVSLEVDAERRNL 120
           ADTGVISAGGGTRFIVDDVRMKDGVVFHYGRFEDAGDGCNSGFSEGQSVSLEVDAERRNL
Sbjct: 61  ADTGVISAGGGTRFIVDDVRMKDGVVFHYGRFEDAGDGCNSGFSEGQSVSLEVDAERRNL 120

Query: 121 NSRLHSAGHLIDICMSNIGLSHFDPGKGHHFPDGPFVEYKGVIPPDQLQDXXXXXXXXXX 180
           NSRLHSAGHLIDICMSNIGLSHFDPGKGHHFPDGPFVEYKGVIPPDQLQD          
Sbjct: 121 NSRLHSAGHLIDICMSNIGLSHFDPGKGHHFPDGPFVEYKGVIPPDQLQDKKNELEKEAN 180

Query: 181 XXITKGAKVLAYILPYEEAAQLCGGALPSYISKDSTPRIVKFGDYPGGPCGGTHVADISI 240
             ITKGAKVLAYILPYEEAAQLCGGALPSYISKDSTPRIVKFGDYPGGPCGGTHVADISI
Sbjct: 181 ELITKGAKVLAYILPYEEAAQLCGGALPSYISKDSTPRIVKFGDYPGGPCGGTHVADISI 240

Query: 241 INNIKVTNIRVKKGLTKVSYSVSL 264
           INNIKVTNIRVKKGLTKVSYSVSL
Sbjct: 241 INNIKVTNIRVKKGLTKVSYSVSL 264



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.138    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,366,734
Number of extensions: 492594
Number of successful extensions: 865
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 867
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 165
Effective length of database: 11,866,615
Effective search space: 1957991475
Effective search space used: 1957991475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)