BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0120400 Os01g0120400|AK104753
         (264 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G16565.2  | chr3:5640531-5642675 REVERSE LENGTH=257            288   3e-78
AT1G50200.1  | chr1:18591429-18598311 REVERSE LENGTH=1004          49   2e-06
AT5G22800.1  | chr5:7616221-7619961 REVERSE LENGTH=979             49   3e-06

>AT3G16565.2 | chr3:5640531-5642675 REVERSE LENGTH=257
          Length = 256

 Score =  288 bits (736), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 138/251 (54%), Positives = 179/251 (71%), Gaps = 1/251 (0%)

Query: 14  PTKLAYFDDMWALSSTATVVSLLQEEGGRRAVLVDSTVFYPQGGGQPADTGVIS-AGGGT 72
           PTKL Y  DM+ L S +  +SL + + GR A++++STVF+PQGGGQP+DTG+I  +G   
Sbjct: 5   PTKLDYHVDMFNLQSHSRFLSLFKAQDGRIALILESTVFHPQGGGQPSDTGLIVFSGSDL 64

Query: 73  RFIVDDVRMKDGVVFHYGRFEDAGDGCNSGFSEGQSVSLEVDAERRNLNSRLHSAGHLID 132
           +F V DVR KDG+V HYG FE +         +G+ V L VD  RR LNSRLHSAGHL+D
Sbjct: 65  KFSVQDVRSKDGIVLHYGVFEGSNPESGIDSEKGKEVYLTVDESRRKLNSRLHSAGHLLD 124

Query: 133 ICMSNIGLSHFDPGKGHHFPDGPFVEYKGVIPPDQLQDXXXXXXXXXXXXITKGAKVLAY 192
           +CM  +GL H +PGKG+HFPDGPFVEYKG +P ++ Q             I+KG KV A 
Sbjct: 125 MCMQKVGLGHLEPGKGYHFPDGPFVEYKGSVPQEEFQVKQKELEAEANELISKGGKVYAA 184

Query: 193 ILPYEEAAQLCGGALPSYISKDSTPRIVKFGDYPGGPCGGTHVADISIINNIKVTNIRVK 252
           ILPYEEA+ LCGG+LP YISK STPRI+K GD PG PCGGTHV+++S I ++K+T +R K
Sbjct: 185 ILPYEEASVLCGGSLPDYISKGSTPRIIKLGDSPGCPCGGTHVSNLSDIISMKITQMRTK 244

Query: 253 KGLTKVSYSVS 263
           KG+TKV Y+++
Sbjct: 245 KGMTKVFYTIA 255



>AT1G50200.1 | chr1:18591429-18598311 REVERSE LENGTH=1004
          Length = 1003

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 7/101 (6%)

Query: 45  VLVDSTVFYPQGGGQPADTGVISAGGGTRFIVDDVRMKDGVVFHYGRF-EDAGDGCNSGF 103
           +++ ST FY + GGQ  DTG+I    GT F V +V++  G V H G   ++ G+      
Sbjct: 571 LVLGSTSFYAEQGGQIFDTGLIEGSFGT-FNVCNVQIFGGFVLHIGYLSKETGE-----V 624

Query: 104 SEGQSVSLEVDAERRNLNSRLHSAGHLIDICMSNIGLSHFD 144
           S G  V  +VD ERR L +  H+  H+++  +  +   H D
Sbjct: 625 SVGDKVICKVDYERRKLIAPNHTCTHMLNYALKEVLGDHID 665



>AT5G22800.1 | chr5:7616221-7619961 REVERSE LENGTH=979
          Length = 978

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 99/240 (41%), Gaps = 31/240 (12%)

Query: 25  ALSSTATVVSLLQE--------EGGRRAVLVDSTVFYPQGGGQPADTG---VISAGGGTR 73
           +LS+ A V SLL          EG    VL+D T FY + GGQ AD G   V S G   +
Sbjct: 548 SLSARAVVKSLLVNGKPVIRVSEGSEVEVLLDRTPFYAESGGQIADHGFLYVSSDGNQEK 607

Query: 74  FIVD--DVRMKDGVVFHYGRFEDAGDGCNSGFSE-GQSVSLEVDAERRNLNSRLHSAGHL 130
            +V+  DV+    +  H G          SG  E G+ V   VDA+ R      H+A HL
Sbjct: 608 AVVEVSDVQKSLKIFVHKG-------TVKSGALEVGKEVEAAVDADLRQRAKVHHTATHL 660

Query: 131 IDICMSNI-GLSHFDPGKGHHFPDGPF-VEYKGVIPPDQLQDXXXXXXXXXXXXITKGAK 188
           +   +  + G      G    F    F   +   +  ++L++            I    +
Sbjct: 661 LQSALKKVVGQETSQAGSLVAFDRLRFDFNFNRSLHDNELEEIECLINRW----IGDATR 716

Query: 189 VLAYILPYEEAAQLCGGALPSYISK--DSTPRIVKFGDYPGGPCGGTHVADISIINNIKV 246
           +   +LP  +A +   GA+  +  K  ++  R+V+        CGGTHV + + I   K+
Sbjct: 717 LETKVLPLADAKR--AGAIAMFGEKYDENEVRVVEVPGVSMELCGGTHVGNTAEIRAFKI 774



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.138    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,059,659
Number of extensions: 268931
Number of successful extensions: 438
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 437
Number of HSP's successfully gapped: 3
Length of query: 264
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 167
Effective length of database: 8,447,217
Effective search space: 1410685239
Effective search space used: 1410685239
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)