FiT-DB / Search/ Help/ Sample detail

Os01g0111200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.7 (0.0142) R2 : 0.171
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.29 (0.03) R2dN8 : 0.22 R2N8 : 0.171
σ : 0.268
deviance : 33.03
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
15.64 0.186 13.7 0.614 0.322 0.62 -0.00251 0.368 0.411 23.4 0.9028 1442 -- --
15.72 0.185 13.7 0.615 0.313 0.554 -0.0316 -- 0.415 23.3 1.712 1455 -- --
15.64 0.184 13.7 0.615 0.319 0.623 -- 0.369 0.411 23.4 0.9042 1444 -- --
15.68 0.184 13.7 0.64 0.297 0.548 -- -- 0.417 23.3 1.6 1463 -- --
17.5 0.195 13.7 0.624 -- 0.809 -- 0.27 0.428 -- 1.889 1582 -- --
18.94 0.204 13.7 0.518 0.327 -- -0.054 -- 0.346 23.3 -- -- -- --
18.95 0.204 13.7 0.521 0.327 -- -- -- 0.346 23.3 -- -- -- --
17.52 0.195 13.7 0.648 -- 0.77 -- -- 0.432 -- 1.99 1593 -- --
24.61 0.231 13.7 -- 0.299 0.331 -- -- 0.391 22.9 10 7478 -- --
25.66 0.237 13.7 0.529 -- -- -- -- 0.349 -- -- -- -- --
26.09 0.239 13.7 -- 0.333 -- -- -- 0.288 23.4 -- -- -- --
26.04 0.238 13.7 -- -- 0.267 -- -- 0.295 -- 8.67 7499 -- --
33.03 0.268 13.7 -- -- -- -- -- 0.29 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 14.54 humidity 80.0 1440 < th dose independent rect. 11 1
2 14.58 humidity 80.0 1440 > th dose independent rect. 11 1
3 14.80 precipitation 0.1 43200 > th dose dependent rect. 19 1
4 15.01 humidity 70.0 1440 > th dose dependent rect. 11 1
5 15.03 wind 1.0 43200 < th dose independent rect. 5 1
7 15.21 humidity 80.0 1440 < th dose independent rect. 10 4
8 15.22 precipitation 0.1 4320 > th dose dependent rect. 13 1
9 15.23 precipitation 0.1 43200 > th dose independent rect. 19 1
12 15.28 radiation 1.0 4320 < th dose independent rect. 18 2
14 15.28 radiation 1.0 4320 < th dose independent rect. 18 6
16 15.28 humidity 80.0 1440 > th dose dependent rect. 10 4
17 15.29 precipitation 0.1 43200 < th dose independent rect. 19 1
18 15.29 humidity 80.0 1440 > th dose independent rect. 10 4
22 15.29 precipitation 0.1 43200 < th dose dependent rect. 19 1
24 15.30 precipitation 0.1 4320 < th dose independent rect. 13 1
27 15.30 precipitation 0.1 4320 < th dose dependent rect. 13 1
32 15.32 precipitation 0.1 14400 > th dose dependent rect. 11 6
33 15.33 precipitation 0.1 4320 > th dose independent rect. 13 1
35 15.33 precipitation 0.1 14400 > th dose dependent rect. 13 4
38 15.37 humidity 90.0 720 > th dose dependent rect. 6 16
41 15.41 precipitation 0.1 14400 > th dose independent rect. 13 9
42 15.41 precipitation 0.1 14400 < th dose independent rect. 13 9
43 15.41 precipitation 0.1 14400 < th dose dependent rect. 13 9
63 15.44 humidity 70.0 1440 > th dose dependent rect. 1 18
65 15.45 precipitation 0.1 14400 > th dose independent rect. 13 4
66 15.45 precipitation 0.1 14400 < th dose independent rect. 13 4
69 15.45 precipitation 0.1 14400 > th dose independent rect. 13 6
70 15.45 precipitation 0.1 14400 < th dose independent rect. 13 6
72 15.45 precipitation 0.1 14400 < th dose dependent rect. 13 4
73 15.45 precipitation 0.1 14400 < th dose dependent rect. 13 6
77 15.46 precipitation 0.1 14400 < th dose independent rect. 11 6
79 15.46 precipitation 0.1 14400 > th dose dependent rect. 11 3
80 15.46 precipitation 0.1 14400 < th dose dependent rect. 11 6
84 15.47 precipitation 0.1 14400 > th dose independent rect. 11 6
94 15.47 humidity 90.0 720 > th dose dependent sin 22 NA
138 15.52 precipitation 0.1 14400 > th dose independent rect. 16 1
139 15.52 precipitation 0.1 14400 < th dose independent rect. 16 1
141 15.52 precipitation 0.1 14400 < th dose dependent rect. 16 1
152 15.53 precipitation 0.1 14400 > th dose independent rect. 15 7
153 15.53 precipitation 0.1 14400 < th dose independent rect. 15 7
158 15.53 humidity 80.0 1440 < th dose independent rect. 9 10
169 15.53 wind 1.0 43200 < th dose dependent rect. 5 1
170 15.53 precipitation 0.1 14400 > th dose dependent rect. 16 1
172 15.53 precipitation 0.1 14400 < th dose dependent rect. 15 7
185 15.54 humidity 70.0 1440 > th dose dependent rect. 1 15
200 15.56 humidity 70.0 1440 > th dose dependent sin 1 NA
202 15.57 precipitation 0.1 14400 > th dose independent sin 19 NA
203 15.57 precipitation 0.1 14400 < th dose independent sin 19 NA
206 15.57 humidity 80.0 1440 < th dose independent rect. 7 12
208 15.57 precipitation 0.1 14400 < th dose dependent sin 19 NA
216 15.57 radiation 1.0 1440 < th dose dependent rect. 7 22
240 15.59 radiation 1.0 4320 > th dose independent rect. 17 2
275 15.59 precipitation 0.1 14400 > th dose dependent rect. 13 10
283 15.60 humidity 80.0 1440 < th dose independent sin 1 NA
301 15.60 radiation 1.0 1440 < th dose dependent rect. 14 21
310 15.61 humidity 80.0 1440 > th dose independent rect. 9 10
326 15.62 humidity 80.0 43200 > th dose independent rect. 5 2
339 15.62 precipitation 0.1 14400 > th dose dependent rect. 11 9
342 15.62 radiation 1.0 1440 < th dose dependent rect. 6 13
409 15.64 radiation 1.0 1440 < th dose dependent no NA NA
414 15.64 radiation 1.0 1440 < th dose dependent rect. 4 15
436 15.64 radiation 1.0 1440 < th dose dependent rect. 23 20
446 15.64 humidity 70.0 1440 > th dose dependent rect. 18 22
470 15.65 humidity 80.0 1440 > th dose independent rect. 6 13
486 15.65 humidity 70.0 1440 > th dose dependent rect. 9 23
487 15.65 radiation 1.0 1440 < th dose dependent rect. 9 23
512 15.66 humidity 70.0 1440 > th dose dependent rect. 9 19
518 15.66 humidity 70.0 1440 > th dose dependent rect. 6 22
524 15.67 humidity 80.0 1440 > th dose independent sin 0 NA
533 15.67 radiation 1.0 1440 < th dose dependent sin 1 NA
538 15.67 humidity 70.0 1440 > th dose dependent rect. 9 10
562 15.68 humidity 80.0 43200 < th dose independent rect. 4 4
577 15.68 humidity 80.0 1440 > th dose independent rect. 2 17
578 15.68 humidity 70.0 1440 > th dose dependent no NA NA
600 15.68 humidity 70.0 1440 > th dose dependent rect. 15 23
603 15.68 radiation 1.0 1440 < th dose dependent rect. 18 23
630 15.70 humidity 80.0 14400 > th dose independent rect. 13 6
654 15.70 humidity 70.0 1440 > th dose dependent rect. 13 23
656 15.71 wind 1.0 43200 > th dose independent rect. 5 1
666 15.71 precipitation 0.1 14400 > th dose dependent sin 18 NA
682 15.72 humidity 80.0 14400 > th dose independent rect. 14 4
696 15.72 radiation 1.0 4320 < th dose dependent rect. 16 1
742 15.74 humidity 80.0 1440 < th dose independent rect. 6 9
753 15.74 radiation 1.0 1440 < th dose independent rect. 7 23
756 15.74 radiation 1.0 1440 < th dose dependent sin 13 NA
761 15.74 precipitation 0.1 4320 > th dose dependent rect. 8 9
818 15.75 precipitation 0.1 4320 > th dose dependent rect. 18 23
826 15.76 humidity 90.0 720 > th dose independent rect. 6 16
834 15.76 precipitation 0.1 14400 > th dose dependent rect. 16 6
858 15.77 humidity 80.0 14400 < th dose independent rect. 14 4
863 15.77 radiation 1.0 4320 < th dose independent rect. 7 12
903 15.78 wind 9.0 43200 > th dose independent rect. 19 2
914 15.78 radiation 1.0 1440 > th dose independent rect. 7 23
915 15.78 wind 9.0 43200 > th dose dependent rect. 19 2
917 15.78 precipitation 0.1 4320 > th dose dependent rect. 18 4
937 15.79 humidity 80.0 14400 > th dose independent rect. 14 1
982 15.80 humidity 80.0 14400 > th dose independent rect. 10 9
993 15.80 humidity 90.0 1440 > th dose independent rect. 7 19