BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0111200 Os01g0111200|AK102802
         (620 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0111200  Conserved hypothetical protein                      715   0.0  
Os06g0496000  Conserved hypothetical protein                      156   5e-38

>Os01g0111200 Conserved hypothetical protein
          Length = 620

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/586 (68%), Positives = 401/586 (68%)

Query: 35  YIGSLISLTSKSEIRYEGILYNINTEESSIGLRNVRSFGTEGRKKDGVQIPASTKVYEYI 94
           YIGSLISLTSKSEIRYEGILYNINTEESSIGLRNVRSFGTEGRKKDGVQIPASTKVYEYI
Sbjct: 35  YIGSLISLTSKSEIRYEGILYNINTEESSIGLRNVRSFGTEGRKKDGVQIPASTKVYEYI 94

Query: 95  LFRGSDIKDLQVKSSXXXXXXXXXXXXHNDPAIIQXXXXXXXXXXXXXXXXXXXVLPDLS 154
           LFRGSDIKDLQVKSS            HNDPAIIQ                   VLPDLS
Sbjct: 95  LFRGSDIKDLQVKSSPPPPPPPQPAAPHNDPAIIQSHYSQPASASSSLPSAGSAVLPDLS 154

Query: 155 SQAAQYGLQRPSFQSNIPLYQXXXXXXXXXXXXXXXXXXXXXVPPMYWXXXXXXXXXXXX 214
           SQAAQYGLQRPSFQSNIPLYQ                     VPPMYW            
Sbjct: 155 SQAAQYGLQRPSFQSNIPLYQPGSVPWGSSAPPSAGNASGLSVPPMYWQGYYPPGGLPPH 214

Query: 215 XXXXXXXXXXXXXXXXXXYAGLNPTLSSGPQKLSEXXXXXXXXXXXXXXXSSGILPTTTA 274
                             YAGLNPTLSSGPQKLSE               SSGILPTTTA
Sbjct: 215 LQQPPLLQPGLSVPQGLQYAGLNPTLSSGPQKLSELQPPLLQPPGTTQGPSSGILPTTTA 274

Query: 275 PSSANLLSPETSKPLLPNMGPLFTPPVPSVGATLPLASLPTSIAESSAMAPHNFSSLVSN 334
           PSSANLLSPETSKPLLPNMGPLFTPPVPSVGATLPLASLPTSIAESSAMAPHNFSSLVSN
Sbjct: 275 PSSANLLSPETSKPLLPNMGPLFTPPVPSVGATLPLASLPTSIAESSAMAPHNFSSLVSN 334

Query: 335 KTADIPGSTLAYXXXXXXXXXXXXXXXXXHMDMPVPLLASSGQLLQNAPSMLSSSQSMQT 394
           KTADIPGSTLAY                 HMDMPVPLLASSGQLLQNAPSMLSSSQSMQT
Sbjct: 335 KTADIPGSTLAYQSVSQAVSSTVASSSSAHMDMPVPLLASSGQLLQNAPSMLSSSQSMQT 394

Query: 395 PLQMSSKDFKAVESKTRVVEPLLPDPPSRAXXXXXXXXXXXXKQTPQKYNGAGSHSNHHY 454
           PLQMSSKDFKAVESKTRVVEPLLPDPPSRA            KQTPQKYNGAGSHSNHHY
Sbjct: 395 PLQMSSKDFKAVESKTRVVEPLLPDPPSRALPENNEPILPLPKQTPQKYNGAGSHSNHHY 454

Query: 455 XXXXXXXXSAFSQSVTNFTEEFDFMAMNEKFNKDEVWGHLGKKSHSRDKXXXXXXXXXXX 514
                   SAFSQSVTNFTEEFDFMAMNEKFNKDEVWGHLGKKSHSRDK           
Sbjct: 455 RGRGRGRGSAFSQSVTNFTEEFDFMAMNEKFNKDEVWGHLGKKSHSRDKDGELGDDVFDE 514

Query: 515 XXXXXXXXNPELAAKPVYVKDDFFDSLTSGTFGRGGQNGRSRFSEQRKLDTETFGDFPRH 574
                   NPELAAKPVYVKDDFFDSLTSGTFGRGGQNGRSRFSEQRKLDTETFGDFPRH
Sbjct: 515 DLEDEETENPELAAKPVYVKDDFFDSLTSGTFGRGGQNGRSRFSEQRKLDTETFGDFPRH 574

Query: 575 RQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGNSYPHRGSY 620
           RQP                                QGNSYPHRGSY
Sbjct: 575 RQPYRGGGRGYRGGGRARGSYYGGRGYGSMGARGGQGNSYPHRGSY 620



>Os06g0496000 Conserved hypothetical protein
          Length = 690

 Score =  156 bits (394), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 77/95 (81%), Positives = 80/95 (84%), Gaps = 4/95 (4%)

Query: 35  YIGSLISLTSKSEIRYEGILYNINTEESSIGLRNVRSFGTEGRKKDGVQIPASTKVYEYI 94
           YIGS+ISLTSKSEIRYEG+LY INTEESSIGLRNVRSFGTEGRKKDG QIPAS K+YEYI
Sbjct: 10  YIGSVISLTSKSEIRYEGVLYTINTEESSIGLRNVRSFGTEGRKKDGQQIPASDKIYEYI 69

Query: 95  LFRGSDIKDLQVKSSXXXXXXXXXXXXHNDPAIIQ 129
           LFRGSDIKDLQVKSS            HNDPAIIQ
Sbjct: 70  LFRGSDIKDLQVKSS----PPAQPTTLHNDPAIIQ 100




 Score =  126 bits (317), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 64/110 (58%), Positives = 71/110 (64%), Gaps = 6/110 (5%)

Query: 466 SQSVTNFTEEFDFMAMNEKFNKDEVWGHLGK-KSHSRDKXXXXXXXXXXXXXXXXXXXNP 524
           S+ +T FTE+FDFMAMNEKFNKDEVWGHLGK K    D                     P
Sbjct: 544 SRPITKFTEDFDFMAMNEKFNKDEVWGHLGKSKGQLNDDPNEYEDDVLEDDISPG---KP 600

Query: 525 ELAAKPVYVKDDFFDSLTSGTFGRGGQNGRSRFSEQRKLDTETFGDFPRH 574
           E+  KPVYVKDDFFDSL+  T   GG NGR +FSEQRK+DTETFGD  RH
Sbjct: 601 EV--KPVYVKDDFFDSLSCNTIDNGGGNGRIKFSEQRKIDTETFGDSARH 648



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.129    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,694,877
Number of extensions: 448926
Number of successful extensions: 1277
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1270
Number of HSP's successfully gapped: 3
Length of query: 620
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 513
Effective length of database: 11,448,903
Effective search space: 5873287239
Effective search space used: 5873287239
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 159 (65.9 bits)