BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0111200 Os01g0111200|AK102802
(620 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G26110.1 | chr1:9024616-9027556 REVERSE LENGTH=612 163 3e-40
AT5G45330.1 | chr5:18363701-18366544 REVERSE LENGTH=572 120 3e-27
AT4G19360.1 | chr4:10564159-10565406 FORWARD LENGTH=269 91 1e-18
AT4G19260.1 | chr4:10533296-10536262 FORWARD LENGTH=289 52 7e-07
AT4G19340.1 | chr4:10559610-10560884 FORWARD LENGTH=233 52 9e-07
>AT1G26110.1 | chr1:9024616-9027556 REVERSE LENGTH=612
Length = 611
Score = 163 bits (412), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 91/168 (54%), Positives = 101/168 (60%), Gaps = 11/168 (6%)
Query: 35 YIGSLISLTSKSEIRYEGILYNINTEESSIGLRNVRSFGTEGRKKDGVQIPASTKVYEYI 94
Y+GSLISLTSKSEIRYEGILYNINT+ESSIGL+NVRSFGTEGRKKDG Q+P S KVYEYI
Sbjct: 17 YVGSLISLTSKSEIRYEGILYNINTDESSIGLQNVRSFGTEGRKKDGPQVPPSDKVYEYI 76
Query: 95 LFRGSDIKDLQVKSSXXXXXXXXXXXXHNDPAIIQXXXXXXXXXXXXXXXXXXXVLPDLS 154
LFRG+DIKDLQVK+S +NDPAIIQ LPD+S
Sbjct: 77 LFRGTDIKDLQVKAS--PPVQPPASTINNDPAIIQSHYPSPMPTSGSLPSTASGSLPDIS 134
Query: 155 SQAAQYGLQRPSFQSNIPLYQXXXXXXXXXXXXXXXXXXXXXVPPMYW 202
S Q G FQ+ +PLYQ PPMYW
Sbjct: 135 SHNGQPGQHGMGFQNAMPLYQPGGNLGSWGASPQ---------PPMYW 173
Score = 135 bits (340), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 110/308 (35%), Positives = 139/308 (45%), Gaps = 46/308 (14%)
Query: 281 LSPETSKPLLPNMGPLFTPPVPSVGATLPLASLPTSIAESSAMAPHNFSSL-VSNKTADI 339
L+ E + PLL N P+ PP TLP + S + S+ A + L +SNK + +
Sbjct: 279 LASEMAPPLLSNKAPITAPP------TLPQDTNLLSFSLSTTRATEASTGLPLSNKPSVV 332
Query: 340 PGSTLAYXXXXXXXXXXXXXXXXXHMDMPVPLLASSGQLLQNAPSMLSSSQSMQTPLQMS 399
G D P PLL + GQLLQ+ SS+ S+ P +
Sbjct: 333 TGPISPPQTTPLTSAPVAGVSSSISQDKPKPLLVTPGQLLQSG----SSAVSLSPPSTNA 388
Query: 400 SKDFKAVESKT------------RVVEPLLPDPPSRAXXXXXXXXXXXXKQTPQKYNGAG 447
KD + V+ + P+LP P S QK NG
Sbjct: 389 DKDVEVVQVSSSAGLEQSVPVTSEAQPPILPLPSSARPT--------------QKPNGHS 434
Query: 448 --SHSNHHYXXXXXXXXSAFSQSVTNFTEEFDFMAMNEKFNKDEVWGHLGKKSHSRDKXX 505
+H+ + + S V FTE+FDF AMNEKFNKDEVWGHLGK S + D
Sbjct: 435 FPNHNGYRGRGRGRGRGAGRSHQVMKFTEDFDFTAMNEKFNKDEVWGHLGK-STTLDGDE 493
Query: 506 XXXXXXXXXXXXXXXXXNPELAAKPVYVKDDFFDSLTSGTFGRGGQNGRSRFSEQRKLDT 565
P++ AKPVY KDDFFDSL+S T R QN R RFSEQRKLDT
Sbjct: 494 DDDSPTVDEAEL------PKIEAKPVYNKDDFFDSLSSNTIDRESQNSRPRFSEQRKLDT 547
Query: 566 ETFGDFPR 573
ETFG+F R
Sbjct: 548 ETFGEFSR 555
>AT5G45330.1 | chr5:18363701-18366544 REVERSE LENGTH=572
Length = 571
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/75 (73%), Positives = 64/75 (85%)
Query: 35 YIGSLISLTSKSEIRYEGILYNINTEESSIGLRNVRSFGTEGRKKDGVQIPASTKVYEYI 94
+IGS ISL SK EIRYEGILY++N ++S++GL+NVRS GTEGRKKDG QIP KVY+YI
Sbjct: 33 FIGSFISLISKYEIRYEGILYHLNVQDSTLGLKNVRSCGTEGRKKDGPQIPPCDKVYDYI 92
Query: 95 LFRGSDIKDLQVKSS 109
LFRGSDIKDLQV S
Sbjct: 93 LFRGSDIKDLQVNPS 107
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 468 SVTNFTEEFDFMAMNEKFNKDEVWGHLGKKSHSRDKXXXXXXXXXXXXXXXXXXXNPELA 527
S +TEEFDF AMNEKF K E+WG+LG+ + P
Sbjct: 423 SSIEYTEEFDFEAMNEKFKKSELWGYLGRNNQRNQN-----------DYGEETAIEPNAE 471
Query: 528 AKPVYVKDDFFDSLTSGTFGRGGQNGR--SRFSEQRKLDTETFGD 570
KP Y KDDFFD+++ R ++G+ ++F E + E FG+
Sbjct: 472 GKPAYNKDDFFDTISCNQLDRVARSGQQHNQFPEHMRQVPEAFGN 516
>AT4G19360.1 | chr4:10564159-10565406 FORWARD LENGTH=269
Length = 268
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 57/73 (78%)
Query: 35 YIGSLISLTSKSEIRYEGILYNINTEESSIGLRNVRSFGTEGRKKDGVQIPASTKVYEYI 94
YIGS ++L + +IRYEGIL +N +ES++GL+NV +GTEGR ++GVQIP TK+ YI
Sbjct: 27 YIGSFVTLIANFDIRYEGILCFLNLQESTLGLQNVVCYGTEGRNQNGVQIPPDTKIQNYI 86
Query: 95 LFRGSDIKDLQVK 107
LF G++IK++ V+
Sbjct: 87 LFNGNNIKEIIVQ 99
>AT4G19260.1 | chr4:10533296-10536262 FORWARD LENGTH=289
Length = 288
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 36 IGSLISLTSKSEIRYEGILYNINTEESSIGLRN-VRSFGTEGRKKDGVQIPASTK-VYEY 93
IG +++ S ++IRYEG++ +N ++S +GL+N VR +G E + ++ K V+ +
Sbjct: 20 IGKFVAVMSNNDIRYEGVISLLNLQDSKLGLQNVVRVYGREVENDNEQRVFQVLKEVHSH 79
Query: 94 ILFRGSDIKDL 104
++FRGSDIK L
Sbjct: 80 MVFRGSDIKLL 90
>AT4G19340.1 | chr4:10559610-10560884 FORWARD LENGTH=233
Length = 232
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 36 IGSLISLTSKSEIRYEGILYNINTEESSIGLRN-VRSFGTEGRKKDGVQIPASTK-VYEY 93
IG +++ S ++IRYEG++ +N ++S +GL+N VR +G E + ++ K V+ +
Sbjct: 20 IGKFVAVLSNNDIRYEGVISLLNLQDSKLGLQNVVRVYGREVENDNEQRVFQVLKEVHSH 79
Query: 94 ILFRGSDIKDL 104
++FRGSDIK L
Sbjct: 80 MVFRGSDIKLL 90
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.129 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,671,482
Number of extensions: 283389
Number of successful extensions: 833
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 825
Number of HSP's successfully gapped: 7
Length of query: 620
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 515
Effective length of database: 8,227,889
Effective search space: 4237362835
Effective search space used: 4237362835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 115 (48.9 bits)