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Os01g0104600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Light-mediated development protein DET1 (Deetiolated1 homolog) (tDET1) (High pigmentation protein 2) (Protein dark green).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.2 (0.0175) R2 : 0.717
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.54 (0.0457) R2dC : 0.704 R2C : 0.689
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.217 (0.0367) R2dN8 : 0.028 R2N8 : 0.0126
σ : 0.329
deviance : 49.54
__
_____
C
peak time of C : 6.26
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
29.19 0.254 11.2 -0.429 1.55 0.0581 -0.666 -1.17 -0.217 6.25 1011 4672 -- --
32.31 0.265 11.2 -0.596 1.55 0.24 -0.553 -- -0.238 6.23 1010 40258 -- --
30.28 0.256 11.2 -0.452 1.55 0.0601 -- -1.11 -0.218 6.24 1011 4697 -- --
33.02 0.268 11.2 -0.609 1.56 0.23 -- -- -0.238 6.22 1010 40442 -- --
153.88 0.578 11.2 -0.351 -- -0.0146 -- -1.06 -0.173 -- 1011 11281 -- --
33.07 0.27 11.2 -0.766 1.55 -- -0.555 -- -0.305 6.24 -- -- -- --
33.83 0.272 11.2 -0.772 1.55 -- -- -- -0.303 6.24 -- -- -- --
155.02 0.582 11.2 -0.717 -- 0.287 -- -- -0.291 -- 1010 40442 -- --
40.3 0.296 11.1 -- 1.55 0.488 -- -- -0.0845 6.22 1010 47520 -- --
158.17 0.588 11.2 -0.73 -- -- -- -- -0.269 -- -- -- -- --
49.54 0.329 11.2 -- 1.54 -- -- -- -0.217 6.26 -- -- -- --
163.58 0.596 11.2 -- -- 0.478 -- -- -0.107 -- 1010 40776 -- --
172.21 0.613 11.2 -- -- -- -- -- -0.188 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 27.07 wind 1 43200 > th dose independent rect. 2 1
2 27.17 wind 1 43200 < th dose independent rect. 2 1
3 27.42 temperature 20 90 > th dose dependent rect. 16 17
5 27.69 wind 1 43200 < th dose dependent rect. 2 1
6 27.73 humidity 90 14400 > th dose independent rect. 5 1
7 27.78 humidity 90 14400 < th dose independent rect. 24 7
9 27.84 wind 1 43200 < th dose dependent rect. 10 1
10 27.86 temperature 20 270 > th dose dependent rect. 14 18
12 27.92 temperature 20 270 > th dose independent rect. 14 19
18 27.98 temperature 20 10 > th dose dependent rect. 16 17
20 28.00 temperature 20 90 > th dose independent rect. 16 17
23 28.03 humidity 90 14400 > th dose independent rect. 22 9
37 28.18 wind 1 43200 < th dose independent rect. 10 1
38 28.19 humidity 60 43200 > th dose dependent rect. 20 2
39 28.19 humidity 60 43200 > th dose dependent rect. 19 4
47 28.22 humidity 90 14400 < th dose independent rect. 23 4
49 28.22 temperature 20 90 > th dose independent rect. 6 13
51 28.23 humidity 90 14400 < th dose independent rect. 22 6
53 28.23 humidity 90 43200 < th dose dependent rect. 20 2
65 28.25 humidity 90 43200 < th dose dependent rect. 19 4
77 28.28 humidity 90 14400 > th dose independent rect. 22 6
91 28.34 wind 1 43200 > th dose independent rect. 10 2
95 28.35 humidity 90 14400 > th dose dependent rect. 5 1
100 28.36 radiation 1 4320 < th dose dependent rect. 4 1
115 28.39 humidity 80 43200 > th dose independent rect. 16 10
120 28.39 wind 1 43200 < th dose dependent rect. 8 17
127 28.41 humidity 80 43200 > th dose independent rect. 14 19
133 28.42 humidity 90 14400 < th dose independent rect. 5 1
140 28.43 wind 1 43200 > th dose independent rect. 9 4
143 28.44 humidity 80 43200 > th dose independent sin 14 NA
152 28.45 humidity 80 43200 < th dose independent rect. 14 19
159 28.46 humidity 80 43200 > th dose independent rect. 15 13
195 28.51 wind 3 43200 > th dose independent rect. 13 3
204 28.52 wind 3 43200 < th dose independent rect. 13 3
214 28.53 temperature 20 90 > th dose dependent rect. 16 10
225 28.55 humidity 80 43200 < th dose independent sin 14 NA
237 28.56 temperature 20 1440 < th dose independent rect. 5 1
247 28.57 wind 1 43200 > th dose independent rect. 8 18
251 28.57 temperature 20 10 > th dose dependent rect. 16 12
254 28.58 humidity 90 14400 > th dose independent rect. 3 4
256 28.58 humidity 80 43200 < th dose independent rect. 16 10
265 28.59 humidity 90 14400 > th dose independent rect. 1 1
270 28.59 wind 1 43200 < th dose independent rect. 8 18
283 28.60 humidity 80 43200 < th dose independent rect. 15 13
336 28.64 radiation 1 4320 < th dose dependent rect. 20 9
356 28.66 wind 1 43200 < th dose independent rect. 13 13
358 28.66 humidity 90 43200 < th dose dependent sin 14 NA
362 28.66 radiation 1 4320 < th dose dependent rect. 22 7
365 28.67 wind 5 43200 < th dose independent rect. 8 1
391 28.68 humidity 80 43200 < th dose independent rect. 19 20
416 28.71 wind 1 43200 < th dose independent rect. 11 15
421 28.71 wind 5 43200 < th dose dependent rect. 15 1
450 28.73 humidity 90 14400 > th dose independent sin 9 NA
451 28.73 wind 5 43200 > th dose independent rect. 8 1
456 28.73 wind 1 43200 > th dose independent rect. 11 15
472 28.74 humidity 70 43200 > th dose independent rect. 7 1
492 28.75 wind 1 43200 > th dose independent rect. 13 13
506 28.76 radiation 20 1440 < th dose independent rect. 11 2
562 28.79 humidity 70 43200 > th dose independent rect. 12 15
577 28.80 humidity 90 14400 < th dose independent sin 9 NA
603 28.81 radiation 10 30 < th dose independent rect. 6 13
606 28.81 humidity 50 43200 < th dose independent rect. 16 17
609 28.81 humidity 70 43200 > th dose independent rect. 10 20
618 28.82 wind 3 43200 > th dose independent rect. 13 8
655 28.83 humidity 50 43200 > th dose dependent sin 15 NA
685 28.85 atmosphere 1000 90 > th dose independent rect. 5 14
689 28.85 humidity 70 43200 > th dose independent rect. 22 18
712 28.86 wind 3 43200 < th dose independent rect. 13 8
733 28.86 humidity 90 43200 < th dose dependent rect. 18 19
810 28.89 wind 7 90 < th dose independent rect. 19 11
817 28.89 wind 1 43200 < th dose dependent sin 19 NA
821 28.89 temperature 20 10 > th dose dependent rect. 16 10
823 28.89 radiation 10 90 < th dose dependent rect. 19 11
833 28.90 atmosphere 995 43200 < th dose independent rect. 14 5
856 28.90 temperature 10 43200 > th dose dependent rect. 21 1
857 28.90 temperature 30 43200 < th dose dependent rect. 21 1
891 28.91 temperature 20 270 > th dose dependent rect. 14 10
892 28.91 radiation 20 10 < th dose dependent rect. 6 13
897 28.91 humidity 50 43200 > th dose dependent rect. 18 19
913 28.92 humidity 50 43200 > th dose independent rect. 16 17
944 28.93 humidity 60 43200 < th dose independent rect. 8 2
946 28.93 atmosphere 995 43200 > th dose independent rect. 14 6
965 28.93 humidity 50 43200 > th dose dependent rect. 12 16