BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0104600 Os01g0104600|AK100613
(511 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G10180.1 | chr4:6346543-6349146 FORWARD LENGTH=544 681 0.0
>AT4G10180.1 | chr4:6346543-6349146 FORWARD LENGTH=544
Length = 543
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/543 (62%), Positives = 418/543 (76%), Gaps = 37/543 (6%)
Query: 5 FRSANLASRVFDRQFLSPRPGATVNTVRQFYENLVPSYTICDIDCPDYSFRKFTDDGNYL 64
F S N+ +RVF+RQ +P PGA+VN R FYENLVPSYT+ D++ PD+ FRKFT+DG +L
Sbjct: 2 FTSGNVTARVFERQIRTPPPGASVNRARHFYENLVPSYTLYDVESPDHCFRKFTEDGLFL 61
Query: 65 VAFSRNHQDLIVYRPIWPTFSCNEPCDSH--DLPPKAKKFDSFFKQLYSISLASSNEYIC 122
++FSRNHQ+LIVYRP W T+S + + LP +A KFDSFF QLYS++LASSNE IC
Sbjct: 62 ISFSRNHQELIVYRPSWLTYSTTDDSTTTLPPLPRRASKFDSFFTQLYSVNLASSNELIC 121
Query: 123 KDFFLYMECHQFGLFATSTAQSNDSSA-TEGAIHGVPSIEKITFYLVRLDDGAILDEKAF 181
KDFFLY + +FGLFATSTAQ +DSS+ + A+ GVPSI+KITF L+RLDDG +LDE+ F
Sbjct: 122 KDFFLYHQTRRFGLFATSTAQIHDSSSPSNDAVPGVPSIDKITFVLLRLDDGVVLDERVF 181
Query: 182 RNDFINLAHSIGAYLYEDLLCIVSLRYQTIHVLQIRDSGNLVEVRKIGAFCQEDDELFL- 240
+DF+NLAH++G +LY+DLL I+SLRYQ IH+LQIRDSG+LV+ R IG FC+EDDELFL
Sbjct: 182 LHDFVNLAHNMGVFLYDDLLAILSLRYQRIHLLQIRDSGHLVDARAIGYFCREDDELFLN 241
Query: 241 -------------------------------HSHGQAARGVSFLPGIKQRLLSFIFRKTW 269
HS Q + SFL G+KQRLLSFIFR+ W
Sbjct: 242 SSSQAMMSQDKSKQQSLSGSKEDDTGENGLRHSLSQPSGSNSFLSGVKQRLLSFIFREIW 301
Query: 270 NEESDQTLRVQHLKKKFYFHFQDYVDLIIWKVQFLDRHHLFIKFGSVDGGVSRSTEQNSA 329
NEESD +RVQ LKKKFYFHFQDYVDLIIWKVQFLDR HL IKFGSVDGGV+RS + + A
Sbjct: 302 NEESDNVMRVQSLKKKFYFHFQDYVDLIIWKVQFLDRQHLLIKFGSVDGGVTRSADHHPA 361
Query: 330 FFAVYNMETTDIVSLYQNSSEELYSLFEYFYDHFHTNPQNSSHGNFISSHSNNVHALDQL 389
FFAVYNMETTDIV+ YQNS+E+LY LFE F DHF T ++ NF++SHSNNV+AL+QL
Sbjct: 362 FFAVYNMETTDIVAFYQNSAEDLYQLFEQFSDHF-TVSSSTPFMNFVTSHSNNVYALEQL 420
Query: 390 RTIKNKANSTSQFVKKMMASLPYTCQSQSPSPYFDLSLFRYDEKLISAIDRHRHCTEHPI 449
+ KNK+NS SQFVKKM+ SLP++CQSQSPSPYFD SLFR+DEKLISA DRHR +++PI
Sbjct: 421 KYTKNKSNSFSQFVKKMLLSLPFSCQSQSPSPYFDQSLFRFDEKLISAADRHRQSSDNPI 480
Query: 450 KFISVKQPNVVKFKIKPGSDSGASDSRAKRISSFLFHPFFPLALSIQQT-YMQPTVVNLH 508
KFIS +QP +KFKIKPG + G +D R+K+I SFLFHP PLA+SIQQT +M P+VVN+H
Sbjct: 481 KFISRRQPQTLKFKIKPGPECGTADGRSKKICSFLFHPHLPLAISIQQTLFMPPSVVNIH 540
Query: 509 FRR 511
FRR
Sbjct: 541 FRR 543
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.137 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,205,602
Number of extensions: 478548
Number of successful extensions: 1337
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1333
Number of HSP's successfully gapped: 2
Length of query: 511
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 408
Effective length of database: 8,282,721
Effective search space: 3379350168
Effective search space used: 3379350168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 114 (48.5 bits)