BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0104600 Os01g0104600|AK100613
(511 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0104600 Similar to Light-mediated development protein ... 1061 0.0
>Os01g0104600 Similar to Light-mediated development protein DET1 (Deetiolated1
homolog) (tDET1) (High pigmentation protein 2) (Protein
dark green)
Length = 511
Score = 1061 bits (2743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/511 (100%), Positives = 511/511 (100%)
Query: 1 MATFFRSANLASRVFDRQFLSPRPGATVNTVRQFYENLVPSYTICDIDCPDYSFRKFTDD 60
MATFFRSANLASRVFDRQFLSPRPGATVNTVRQFYENLVPSYTICDIDCPDYSFRKFTDD
Sbjct: 1 MATFFRSANLASRVFDRQFLSPRPGATVNTVRQFYENLVPSYTICDIDCPDYSFRKFTDD 60
Query: 61 GNYLVAFSRNHQDLIVYRPIWPTFSCNEPCDSHDLPPKAKKFDSFFKQLYSISLASSNEY 120
GNYLVAFSRNHQDLIVYRPIWPTFSCNEPCDSHDLPPKAKKFDSFFKQLYSISLASSNEY
Sbjct: 61 GNYLVAFSRNHQDLIVYRPIWPTFSCNEPCDSHDLPPKAKKFDSFFKQLYSISLASSNEY 120
Query: 121 ICKDFFLYMECHQFGLFATSTAQSNDSSATEGAIHGVPSIEKITFYLVRLDDGAILDEKA 180
ICKDFFLYMECHQFGLFATSTAQSNDSSATEGAIHGVPSIEKITFYLVRLDDGAILDEKA
Sbjct: 121 ICKDFFLYMECHQFGLFATSTAQSNDSSATEGAIHGVPSIEKITFYLVRLDDGAILDEKA 180
Query: 181 FRNDFINLAHSIGAYLYEDLLCIVSLRYQTIHVLQIRDSGNLVEVRKIGAFCQEDDELFL 240
FRNDFINLAHSIGAYLYEDLLCIVSLRYQTIHVLQIRDSGNLVEVRKIGAFCQEDDELFL
Sbjct: 181 FRNDFINLAHSIGAYLYEDLLCIVSLRYQTIHVLQIRDSGNLVEVRKIGAFCQEDDELFL 240
Query: 241 HSHGQAARGVSFLPGIKQRLLSFIFRKTWNEESDQTLRVQHLKKKFYFHFQDYVDLIIWK 300
HSHGQAARGVSFLPGIKQRLLSFIFRKTWNEESDQTLRVQHLKKKFYFHFQDYVDLIIWK
Sbjct: 241 HSHGQAARGVSFLPGIKQRLLSFIFRKTWNEESDQTLRVQHLKKKFYFHFQDYVDLIIWK 300
Query: 301 VQFLDRHHLFIKFGSVDGGVSRSTEQNSAFFAVYNMETTDIVSLYQNSSEELYSLFEYFY 360
VQFLDRHHLFIKFGSVDGGVSRSTEQNSAFFAVYNMETTDIVSLYQNSSEELYSLFEYFY
Sbjct: 301 VQFLDRHHLFIKFGSVDGGVSRSTEQNSAFFAVYNMETTDIVSLYQNSSEELYSLFEYFY 360
Query: 361 DHFHTNPQNSSHGNFISSHSNNVHALDQLRTIKNKANSTSQFVKKMMASLPYTCQSQSPS 420
DHFHTNPQNSSHGNFISSHSNNVHALDQLRTIKNKANSTSQFVKKMMASLPYTCQSQSPS
Sbjct: 361 DHFHTNPQNSSHGNFISSHSNNVHALDQLRTIKNKANSTSQFVKKMMASLPYTCQSQSPS 420
Query: 421 PYFDLSLFRYDEKLISAIDRHRHCTEHPIKFISVKQPNVVKFKIKPGSDSGASDSRAKRI 480
PYFDLSLFRYDEKLISAIDRHRHCTEHPIKFISVKQPNVVKFKIKPGSDSGASDSRAKRI
Sbjct: 421 PYFDLSLFRYDEKLISAIDRHRHCTEHPIKFISVKQPNVVKFKIKPGSDSGASDSRAKRI 480
Query: 481 SSFLFHPFFPLALSIQQTYMQPTVVNLHFRR 511
SSFLFHPFFPLALSIQQTYMQPTVVNLHFRR
Sbjct: 481 SSFLFHPFFPLALSIQQTYMQPTVVNLHFRR 511
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.137 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,549,048
Number of extensions: 666282
Number of successful extensions: 1599
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1599
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 406
Effective length of database: 11,553,331
Effective search space: 4690652386
Effective search space used: 4690652386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 158 (65.5 bits)