BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0638600 Os12g0638600|AK065543
         (655 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0638600  Conserved hypothetical protein                     1278   0.0  

>Os12g0638600 Conserved hypothetical protein
          Length = 655

 Score = 1278 bits (3307), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 622/655 (94%), Positives = 622/655 (94%)

Query: 1   MEEAVRVDLDKLPIKRLHAIDEAGNEHYPPDTSSEEQRLSAIRRIDFSWVIXXXXXXXXX 60
           MEEAVRVDLDKLPIKRLHAIDEAGNEHYPPDTSSEEQRLSAIRRIDFSWVI         
Sbjct: 1   MEEAVRVDLDKLPIKRLHAIDEAGNEHYPPDTSSEEQRLSAIRRIDFSWVIDKDAKKPKK 60

Query: 61  XXXXXXXXXXXXXXGMMESLQQAQQELSVVIDLISTVEANDAVAVAGMLKPKSLPTETLV 120
                         GMMESLQQAQQELSVVIDLISTVEANDAVAVAGMLKPKSLPTETLV
Sbjct: 61  DTAQQQQQQAWPWQGMMESLQQAQQELSVVIDLISTVEANDAVAVAGMLKPKSLPTETLV 120

Query: 121 DTAVSAATKLQRVRHLSRYFKQSAKTMEQQFQKESRFYGSLIRLQQNWKVKRQRFGGSGP 180
           DTAVSAATKLQRVRHLSRYFKQSAKTMEQQFQKESRFYGSLIRLQQNWKVKRQRFGGSGP
Sbjct: 121 DTAVSAATKLQRVRHLSRYFKQSAKTMEQQFQKESRFYGSLIRLQQNWKVKRQRFGGSGP 180

Query: 181 GSEGFMFDLIDTSQLDTAAMPRLSSLPLIPIDQDSSGTLSVQVPQKSCRFLSLNFRGDSA 240
           GSEGFMFDLIDTSQLDTAAMPRLSSLPLIPIDQDSSGTLSVQVPQKSCRFLSLNFRGDSA
Sbjct: 181 GSEGFMFDLIDTSQLDTAAMPRLSSLPLIPIDQDSSGTLSVQVPQKSCRFLSLNFRGDSA 240

Query: 241 NGVENYGHKLKDGISSITSSETDNDDVNKSIKHAHSILRNIHKSIFEEQVFDMVIRETFV 300
           NGVENYGHKLKDGISSITSSETDNDDVNKSIKHAHSILRNIHKSIFEEQVFDMVIRETFV
Sbjct: 241 NGVENYGHKLKDGISSITSSETDNDDVNKSIKHAHSILRNIHKSIFEEQVFDMVIRETFV 300

Query: 301 QSQGINVTGMREDFLQLAIGQECSLCLSLAHSGDGSDSEMVDHEDHANSEDASNLVLVTM 360
           QSQGINVTGMREDFLQLAIGQECSLCLSLAHSGDGSDSEMVDHEDHANSEDASNLVLVTM
Sbjct: 301 QSQGINVTGMREDFLQLAIGQECSLCLSLAHSGDGSDSEMVDHEDHANSEDASNLVLVTM 360

Query: 361 NGKLDPLRKDVTGFPNPRSLEIYLLQLFHENILRKVREKSLNIGRYQSPAQVAGDDYGLL 420
           NGKLDPLRKDVTGFPNPRSLEIYLLQLFHENILRKVREKSLNIGRYQSPAQVAGDDYGLL
Sbjct: 361 NGKLDPLRKDVTGFPNPRSLEIYLLQLFHENILRKVREKSLNIGRYQSPAQVAGDDYGLL 420

Query: 421 GHFCLTVAHRIFSNKXXXXXXXXXXRVPYLHLRSLPTWHSRTSSWSLCLKVPQPILAADR 480
           GHFCLTVAHRIFSNK          RVPYLHLRSLPTWHSRTSSWSLCLKVPQPILAADR
Sbjct: 421 GHFCLTVAHRIFSNKVLVELESVVSRVPYLHLRSLPTWHSRTSSWSLCLKVPQPILAADR 480

Query: 481 IAKPSDNHELKYKSRSQFNTKVIVKDSQISLMGEGSPSIAGSLTGKPSDGYLVNSYNCDL 540
           IAKPSDNHELKYKSRSQFNTKVIVKDSQISLMGEGSPSIAGSLTGKPSDGYLVNSYNCDL
Sbjct: 481 IAKPSDNHELKYKSRSQFNTKVIVKDSQISLMGEGSPSIAGSLTGKPSDGYLVNSYNCDL 540

Query: 541 EDLPTMLLQQVASQVIHWLHEEALVLGMNVTRDFLCLYFDLEQGETLGLVANVDPDDTCG 600
           EDLPTMLLQQVASQVIHWLHEEALVLGMNVTRDFLCLYFDLEQGETLGLVANVDPDDTCG
Sbjct: 541 EDLPTMLLQQVASQVIHWLHEEALVLGMNVTRDFLCLYFDLEQGETLGLVANVDPDDTCG 600

Query: 601 CISWYLTIDHPTEDGKMSADSQEFEKRRFLGYVSLEVLYSTLMDLINLCNAGAHH 655
           CISWYLTIDHPTEDGKMSADSQEFEKRRFLGYVSLEVLYSTLMDLINLCNAGAHH
Sbjct: 601 CISWYLTIDHPTEDGKMSADSQEFEKRRFLGYVSLEVLYSTLMDLINLCNAGAHH 655



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.133    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,094,241
Number of extensions: 853161
Number of successful extensions: 2200
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2199
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 548
Effective length of database: 11,448,903
Effective search space: 6273998844
Effective search space used: 6273998844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)