BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0635700 Os12g0635700|AK108161
         (294 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0635700  Conserved hypothetical protein                      371   e-103

>Os12g0635700 Conserved hypothetical protein
          Length = 294

 Score =  371 bits (952), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/294 (68%), Positives = 202/294 (68%)

Query: 1   MXXXXXXXXYWLAEHPAIVSFRWSPTGLWFSTWAFLLGFLASYVXXXXXXXXXXXXXXXX 60
           M        YWLAEHPAIVSFRWSPTGLWFSTWAFLLGFLASYV                
Sbjct: 1   MAAATSTAAYWLAEHPAIVSFRWSPTGLWFSTWAFLLGFLASYVALCLALDAILAALLRR 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXIFAGTLLSALAEIXXXXXXXXXXXXXXPFRWLLCFPP 120
                                  IFAGTLLSALAEI              PFRWLLCFPP
Sbjct: 61  RRPLPLGPLPAAHALLMAAVSAAIFAGTLLSALAEIRDTRWSWRGRSRTTPFRWLLCFPP 120

Query: 121 GTRSSGRVFFWSYAYYLSRYLHAARGLFAVLQXXXXXXXXXXXXXXXXXXXFLWLEFSQS 180
           GTRSSGRVFFWSYAYYLSRYLHAARGLFAVLQ                   FLWLEFSQS
Sbjct: 121 GTRSSGRVFFWSYAYYLSRYLHAARGLFAVLQRRRGAAARVFAHAASVAMAFLWLEFSQS 180

Query: 181 FQVLAILASTLAHAVAFGFRFWVGAGLPAARGAPVALACQCALLGCNLLCHVGVVWMHFX 240
           FQVLAILASTLAHAVAFGFRFWVGAGLPAARGAPVALACQCALLGCNLLCHVGVVWMHF 
Sbjct: 181 FQVLAILASTLAHAVAFGFRFWVGAGLPAARGAPVALACQCALLGCNLLCHVGVVWMHFG 240

Query: 241 XXXXXXXXXXXAWVFNTLLNAALLWVFLHCYGKRGVCDDDGGATAASARHDKDL 294
                      AWVFNTLLNAALLWVFLHCYGKRGVCDDDGGATAASARHDKDL
Sbjct: 241 GVAGGGCSGIGAWVFNTLLNAALLWVFLHCYGKRGVCDDDGGATAASARHDKDL 294



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.332    0.142    0.509 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,647,966
Number of extensions: 227831
Number of successful extensions: 892
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 890
Number of HSP's successfully gapped: 3
Length of query: 294
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 194
Effective length of database: 11,814,401
Effective search space: 2291993794
Effective search space used: 2291993794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 155 (64.3 bits)