BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0621900 Os12g0621900|AK068389
(148 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0621900 Conserved hypothetical protein 225 7e-60
Os01g0387333 Conserved hypothetical protein 104 2e-23
Os04g0275966 Conserved hypothetical protein 75 2e-14
>Os12g0621900 Conserved hypothetical protein
Length = 148
Score = 225 bits (574), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 116/148 (78%), Positives = 116/148 (78%)
Query: 1 FISTPRKPGRELQXXXXXXXXXXXAKKEELAFIVEPSSSPTLSRSIFLTSCLPLYPLTPS 60
FISTPRKPGRELQ AKKEELAFIVEPSSSPTLSRSIFLTSCLPLYPLTPS
Sbjct: 1 FISTPRKPGRELQLSLSTSCSSSTAKKEELAFIVEPSSSPTLSRSIFLTSCLPLYPLTPS 60
Query: 61 HFIHCSDGNAAVAPGALRTAAADIVVVPTAVDQAEPSHHANVFSLKSSSKPLNNPRQWRS 120
HFIHCSDGNAAVAPGALRTAAADIVVVPTAVDQAEPSHHANVFSLKSSSKPLNNPRQWRS
Sbjct: 61 HFIHCSDGNAAVAPGALRTAAADIVVVPTAVDQAEPSHHANVFSLKSSSKPLNNPRQWRS 120
Query: 121 KYGXXXXXXXXXXXXXXXXXXXXXLGVF 148
KYG LGVF
Sbjct: 121 KYGDRPPSSSPPVAVAIVDSASSDLGVF 148
>Os01g0387333 Conserved hypothetical protein
Length = 193
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 60/82 (73%), Gaps = 4/82 (4%)
Query: 46 IFLTSCLPLYPLTPSHFIHCSDGNAAVAPGALR----TAAADIVVVPTAVDQAEPSHHAN 101
I + C LTPS F+HCSDGNA + GAL AAADIV VP+AVD+A+PS HAN
Sbjct: 43 IIFSPCRANPLLTPSCFVHCSDGNATSSTGALERAPSAAAADIVAVPSAVDRAKPSRHAN 102
Query: 102 VFSLKSSSKPLNNPRQWRSKYG 123
FSLKSSSKPLNNPRQWRSK G
Sbjct: 103 AFSLKSSSKPLNNPRQWRSKCG 124
>Os04g0275966 Conserved hypothetical protein
Length = 132
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 39/44 (88%)
Query: 80 AAADIVVVPTAVDQAEPSHHANVFSLKSSSKPLNNPRQWRSKYG 123
AAADIV VPTAVD+++PS HAN FSLKSSSKPLNNPRQ RSK G
Sbjct: 34 AAADIVAVPTAVDRSKPSRHANAFSLKSSSKPLNNPRQRRSKCG 77
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.131 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,276,427
Number of extensions: 155143
Number of successful extensions: 485
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 485
Number of HSP's successfully gapped: 3
Length of query: 148
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 56
Effective length of database: 12,232,113
Effective search space: 684998328
Effective search space used: 684998328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 151 (62.8 bits)