BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0621700 Os12g0621700|AK073528
         (620 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0621700  Conserved hypothetical protein                     1259   0.0  

>Os12g0621700 Conserved hypothetical protein
          Length = 620

 Score = 1259 bits (3258), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 608/620 (98%), Positives = 608/620 (98%)

Query: 1   MAQAAVQSSLNGDLLIGRAAGVPRMKRKTPSELRGEQLKRRASDKPANDQSLHSAAFDRA 60
           MAQAAVQSSLNGDLLIGRAAGVPRMKRKTPSELRGEQLKRRASDKPANDQSLHSAAFDRA
Sbjct: 1   MAQAAVQSSLNGDLLIGRAAGVPRMKRKTPSELRGEQLKRRASDKPANDQSLHSAAFDRA 60

Query: 61  SNGFRNPEQSKISKYISTRVTEVFPVKKSRNLGKENFKNNEKAPKSADAVTTSDFASPSL 120
           SNGFRNPEQSKISKYISTRVTEVFPVKKSRNLGKENFKNNEKAPKSADAVTTSDFASPSL
Sbjct: 61  SNGFRNPEQSKISKYISTRVTEVFPVKKSRNLGKENFKNNEKAPKSADAVTTSDFASPSL 120

Query: 121 PCGYGDSAKLDSAVPSHTEAAKPSFRKVEKCSENALRSVSELHIGDEQQSGTNKFDMEKV 180
           PCGYGDSAKLDSAVPSHTEAAKPSFRKVEKCSENALRSVSELHIGDEQQSGTNKFDMEKV
Sbjct: 121 PCGYGDSAKLDSAVPSHTEAAKPSFRKVEKCSENALRSVSELHIGDEQQSGTNKFDMEKV 180

Query: 181 LKGFGARDAFVASKLTDPNIQVGVVPSKSLDLCPSEIAVPGKRAPLDLTLKTTLQFVSSS 240
           LKGFGARDAFVASKLTDPNIQVGVVPSKSLDLCPSEIAVPGKRAPLDLTLKTTLQFVSSS
Sbjct: 181 LKGFGARDAFVASKLTDPNIQVGVVPSKSLDLCPSEIAVPGKRAPLDLTLKTTLQFVSSS 240

Query: 241 SVKWCHKISTSFGRSSIVGPIAQSYHHGCQNSGCSRPERNKEFLFSKALQSWVYPQSLLP 300
           SVKWCHKISTSFGRSSIVGPIAQSYHHGCQNSGCSRPERNKEFLFSKALQSWVYPQSLLP
Sbjct: 241 SVKWCHKISTSFGRSSIVGPIAQSYHHGCQNSGCSRPERNKEFLFSKALQSWVYPQSLLP 300

Query: 301 ASIISAMVSSTVRGESDFLLKRHQDWEDSFQNLYYMLRKNLLNIFYVYTPQFVALFIGGN 360
           ASIISAMVSSTVRGESDFLLKRHQDWEDSFQNLYYMLRKNLLNIFYVYTPQFVALFIGGN
Sbjct: 301 ASIISAMVSSTVRGESDFLLKRHQDWEDSFQNLYYMLRKNLLNIFYVYTPQFVALFIGGN 360

Query: 361 CLDKKQTCNAYLSQSTRGIRSLLRRHGVCFSMPLCNTEVEQVTEDDLIELSEIQKRNLGQ 420
           CLDKKQTCNAYLSQSTRGIRSLLRRHGVCFSMPLCNTEVEQVTEDDLIELSEIQKRNLGQ
Sbjct: 361 CLDKKQTCNAYLSQSTRGIRSLLRRHGVCFSMPLCNTEVEQVTEDDLIELSEIQKRNLGQ 420

Query: 421 ALHIDAMSEVDNTTQSLLSFVGNKSVHGLYDFLLNYKSFLNSLSATDIPVLYSPVPFQNG 480
           ALHIDAMSEVDNTTQSLLSFVGNKSVHGLYDFLLNYKSFLNSLSATDIPVLYSPVPFQNG
Sbjct: 421 ALHIDAMSEVDNTTQSLLSFVGNKSVHGLYDFLLNYKSFLNSLSATDIPVLYSPVPFQNG 480

Query: 481 CLHIPEVKCKEMRKADIGLVSGGFDAGEPGSTFASLTGNICYSMEIKDPVLPPWVVSGIC 540
           CLHIPEVKCKEMRKADIGLVSGGFDAGEPGSTFASLTGNICYSMEIKDPVLPPWVVSGIC
Sbjct: 481 CLHIPEVKCKEMRKADIGLVSGGFDAGEPGSTFASLTGNICYSMEIKDPVLPPWVVSGIC 540

Query: 541 AAMSSDANSFDLMMATEPSSMGLNAALSCVSSNSQSKAHSSEGCESLGIPEATLVPXXXX 600
           AAMSSDANSFDLMMATEPSSMGLNAALSCVSSNSQSKAHSSEGCESLGIPEATLVP    
Sbjct: 541 AAMSSDANSFDLMMATEPSSMGLNAALSCVSSNSQSKAHSSEGCESLGIPEATLVPSLRS 600

Query: 601 XXXXXXXXYKDGEYIAYTTV 620
                   YKDGEYIAYTTV
Sbjct: 601 ASSLRRLSYKDGEYIAYTTV 620



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.130    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,854,326
Number of extensions: 817048
Number of successful extensions: 2012
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2012
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 513
Effective length of database: 11,448,903
Effective search space: 5873287239
Effective search space used: 5873287239
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 159 (65.9 bits)