BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0616400 Os12g0616400|AK106830
         (285 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0616400  Similar to Transcription factor PCF8 (Fragment)     296   9e-81

>Os12g0616400 Similar to Transcription factor PCF8 (Fragment)
          Length = 285

 Score =  296 bits (759), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 165/285 (57%), Positives = 165/285 (57%)

Query: 1   SSACSEAIRPAXXXXXXXXXLQGAQLTASERFRVAQSELLLXXXXXXXXXXXXXXXXIDP 60
           SSACSEAIRPA         LQGAQLTASERFRVAQSELLL                IDP
Sbjct: 1   SSACSEAIRPASSSSSCSYSLQGAQLTASERFRVAQSELLLVGPSNSGASSPGSSVSIDP 60

Query: 61  LQTKRRRISHEVAQASAMEEVVVGGKERKRPRGALDCSFALXXXXXXXXXXXXXXXXXXX 120
           LQTKRRRISHEVAQASAMEEVVVGGKERKRPRGALDCSFAL                   
Sbjct: 61  LQTKRRRISHEVAQASAMEEVVVGGKERKRPRGALDCSFALPAAASSPPPPAADDAEVST 120

Query: 121 XXXXXXXXXXXXNAPCDNGGGAFAELLHCSNTNGSKXXXXXXXXXXXXXXXXXXXXXXXX 180
                       NAPCDNGGGAFAELLHCSNTNGSK                        
Sbjct: 121 SETSKSSVLSLANAPCDNGGGAFAELLHCSNTNGSKPLQQQQQATLAYYAAAQSAHMAAP 180

Query: 181 XXFEVMAMPPHLAFSQEQQQHATVAAFDRGTLQSNASLWXXXXXXXXXXXXFLLQRFAAA 240
             FEVMAMPPHLAFSQEQQQHATVAAFDRGTLQSNASLW            FLLQRFAAA
Sbjct: 181 MSFEVMAMPPHLAFSQEQQQHATVAAFDRGTLQSNASLWPPPPQPPPSQHPFLLQRFAAA 240

Query: 241 PAEVXXXXXXXXXXXXXXXXXXXXXXXXXXERRLQLWDFKEERKT 285
           PAEV                          ERRLQLWDFKEERKT
Sbjct: 241 PAEVAGLPFFLAGGVGGAAAAAPAATTNGGERRLQLWDFKEERKT 285



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.129    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,384,976
Number of extensions: 105173
Number of successful extensions: 222
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 185
Effective length of database: 11,814,401
Effective search space: 2185664185
Effective search space used: 2185664185
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)