Os12g0616400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcription factor PCF8 (Fragment).
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Os12g0616400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcription factor PCF8 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 213.42 | 0.686 | 8.64 | 0.833 | 3.54 | 1.72 | -0.343 | 1.14 | -0.348 | 21.4 | 23.47 | 283 | -- | -- |
| 214.09 | 0.681 | 8.66 | 0.698 | 3.49 | 1.8 | -0.388 | -- | -0.388 | 21.4 | 23.21 | 318 | -- | -- |
| 213.81 | 0.681 | 8.64 | 0.832 | 3.54 | 1.73 | -- | 1.06 | -0.361 | 21.4 | 23.26 | 283 | -- | -- |
| 214.34 | 0.682 | 8.66 | 0.651 | 3.49 | 1.83 | -- | -- | -0.414 | 21.4 | 23.2 | 315 | -- | -- |
| 726.91 | 1.26 | 8.53 | 0.806 | -- | 3.5 | -- | 3.49 | -0.411 | -- | 24.31 | 654 | -- | -- |
| 273.16 | 0.775 | 8.62 | 1.02 | 3.94 | -- | 0.0367 | -- | -0.158 | 20.7 | -- | -- | -- | -- |
| 273.17 | 0.774 | 8.62 | 1.02 | 3.94 | -- | -- | -- | -0.158 | 20.7 | -- | -- | -- | -- |
| 706.63 | 1.24 | 8.6 | 0.192 | -- | 3.96 | -- | -- | -0.585 | -- | 24.27 | 654 | -- | -- |
| 216.63 | 0.686 | 8.77 | -- | 3.87 | 1.69 | -- | -- | -0.782 | 20.7 | 16.9 | 18363 | -- | -- |
| 1151.65 | 1.59 | 8.51 | 1.01 | -- | -- | -- | -- | -0.19 | -- | -- | -- | -- | -- |
| 300.57 | 0.811 | 8.64 | -- | 3.94 | -- | -- | -- | -0.272 | 20.7 | -- | -- | -- | -- |
| 707.53 | 1.24 | 8.61 | -- | -- | 3.99 | -- | -- | -0.619 | -- | 24.2 | 654 | -- | -- |
| 1178.65 | 1.6 | 8.54 | -- | -- | -- | -- | -- | -0.303 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 203.50 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 4 | 206.53 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 20 |
| 14 | 209.29 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 13 |
| 33 | 210.90 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 34 | 210.91 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 4 |
| 41 | 211.37 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 46 | 211.44 | temperature | 25 | 14400 | < th | dose dependent | rect. | 13 | 2 |
| 47 | 211.45 | temperature | 20 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 50 | 211.48 | temperature | 20 | 14400 | > th | dose dependent | rect. | 8 | 3 |
| 54 | 211.66 | temperature | 20 | 14400 | > th | dose independent | rect. | 16 | 9 |
| 55 | 211.66 | temperature | 20 | 14400 | > th | dose independent | rect. | 14 | 11 |
| 61 | 211.75 | temperature | 25 | 14400 | < th | dose dependent | rect. | 6 | 13 |
| 64 | 211.78 | temperature | 25 | 14400 | < th | dose independent | rect. | 6 | 10 |
| 68 | 211.80 | temperature | 25 | 14400 | < th | dose dependent | rect. | 12 | 7 |
| 76 | 211.87 | temperature | 25 | 14400 | < th | dose dependent | sin | 22 | NA |
| 79 | 211.90 | temperature | 25 | 720 | > th | dose dependent | rect. | 2 | 9 |
| 80 | 211.90 | temperature | 25 | 14400 | < th | dose dependent | rect. | 12 | 10 |
| 87 | 211.94 | temperature | 25 | 14400 | < th | dose dependent | rect. | 10 | 12 |
| 113 | 212.05 | temperature | 25 | 14400 | > th | dose independent | rect. | 6 | 9 |
| 136 | 212.12 | temperature | 20 | 14400 | > th | dose independent | sin | 17 | NA |
| 182 | 212.31 | temperature | 25 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 200 | 212.40 | temperature | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 225 | 212.48 | temperature | 20 | 14400 | < th | dose independent | rect. | 14 | 11 |
| 227 | 212.49 | temperature | 20 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 255 | 212.60 | temperature | 20 | 720 | > th | dose dependent | sin | 4 | NA |
| 311 | 212.75 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 332 | 212.81 | temperature | 20 | 270 | > th | dose dependent | sin | 0 | NA |
| 353 | 212.88 | temperature | 20 | 14400 | > th | dose dependent | rect. | 7 | 12 |
| 354 | 212.89 | temperature | 25 | 14400 | < th | dose independent | sin | 0 | NA |
| 379 | 212.96 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 396 | 213.00 | temperature | 20 | 14400 | < th | dose independent | sin | 17 | NA |
| 425 | 213.06 | temperature | 25 | 14400 | > th | dose independent | sin | 0 | NA |
| 486 | 213.18 | temperature | 25 | 14400 | < th | dose dependent | rect. | 6 | 5 |
| 514 | 213.24 | temperature | 25 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 524 | 213.27 | temperature | 30 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 541 | 213.30 | temperature | 20 | 14400 | > th | dose dependent | sin | 0 | NA |
| 666 | 213.51 | temperature | 25 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 674 | 213.53 | temperature | 25 | 14400 | < th | dose independent | rect. | 12 | 2 |
| 685 | 213.54 | temperature | 20 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 763 | 213.66 | temperature | 25 | 14400 | < th | dose independent | rect. | 12 | 7 |
| 845 | 213.76 | temperature | 25 | 14400 | > th | dose independent | rect. | 12 | 7 |