BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0609600 Os12g0609600|AK111050
         (173 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0609600  Hypothetical protein                                148   2e-36

>Os12g0609600 Hypothetical protein
          Length = 173

 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 89/173 (51%), Positives = 89/173 (51%)

Query: 1   MNRFRNVXXXXXXXXXXXXXXXXXXXXXXXXXTREHXXXXXXXXXXXXXDSKAVSAGGDG 60
           MNRFRNV                         TREH             DSKAVSAGGDG
Sbjct: 1   MNRFRNVLLRKCKSLSRSLSRSSSYRNLRSMSTREHVVAGGDGGIVGGGDSKAVSAGGDG 60

Query: 61  AVVFVGSSRRRYVISNKHLSHPLIAALIXXXXXXXXXXXXXXXXXXXXVVEXXXXXXXXX 120
           AVVFVGSSRRRYVISNKHLSHPLIAALI                    VVE         
Sbjct: 61  AVVFVGSSRRRYVISNKHLSHPLIAALIDDDVPAAAAGDGKEGGGGGGVVERRRSTSAAT 120

Query: 121 XXXXXXKPIAVNCEVVLFDHLLWMLDNAVDLRXXXXXXXXXXXMRELAQLYAY 173
                 KPIAVNCEVVLFDHLLWMLDNAVDLR           MRELAQLYAY
Sbjct: 121 TTSSSTKPIAVNCEVVLFDHLLWMLDNAVDLRAGGDGDDDDAAMRELAQLYAY 173



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,678,890
Number of extensions: 52616
Number of successful extensions: 187
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 79
Effective length of database: 12,127,685
Effective search space: 958087115
Effective search space used: 958087115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 152 (63.2 bits)