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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0609600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.61 (0.131) R2 : 0.46
β1 : -8.57 (0.865) R2dD : 0.848 R2D : -0.0666
β2 : 1.22 (0.231) R2dC : 0.033 R2C : -0.0586
β3 : 3.81 (0.481) R2dE : 0.267 R2E : -0.135
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -14.3 (3.83) R2dD*E : 0.144 R2D*E : -0.556
γ1 : -2.04 (0.232) R2dN8 : 0.183 R2N8 : -0.00699
σ : 1.67
deviance : 1279.32
__
_____
C
peak time of C : 7.17
E
wheather : temperature
threshold : 26.6
memory length : 1220
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 8.79
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1273.74 1.68 5.61 -8.54 1.2 3.85 -1.52 -14.1 -2.11 7.44 26.33 1196 8.83 --
1316.35 1.69 5.3 -5.57 1.09 2.32 -2.11 -- -1.66 7.06 26.37 1168 8.37 --
1279.32 1.67 5.61 -8.57 1.22 3.81 -- -14.3 -2.04 7.17 26.6 1220 8.79 --
1319.65 1.69 5.24 -5.57 1.23 2.37 -- -- -1.53 7.4 26.6 1151 8.36 --
1348.47 1.71 5.65 -8.68 -- 4.16 -- -14.9 -2.17 -- 25.97 1183 7.65 --
1526.57 1.83 5.26 -4.94 1.5 -- -1.17 -- -1.62 6.18 -- -- -- --
1529.92 1.83 5.26 -4.96 1.49 -- -- -- -1.62 6.11 -- -- -- --
1393.67 1.74 5.28 -5.6 -- 2.53 -- -- -1.54 -- 26.2 1169 7.7 --
2111.59 2.14 5.06 -- 1.31 1.29 -- -- -0.801 6.68 28.6 1229 12.6 --
1645.06 1.9 5.29 -4.92 -- -- -- -- -1.58 -- -- -- -- --
2177.76 2.18 5.14 -- 1.42 -- -- -- -1.06 6.29 -- -- -- --
2177.18 2.17 5.14 -- -- 1.64 -- -- -0.909 -- 26.6 1114 6.96 --
2282.45 2.23 5.16 -- -- -- -- -- -1.04 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1289.37 temperature 25 1440 > th dose dependent rect. 15 8
12 1294.08 temperature 25 1440 > th dose dependent rect. 16 1
14 1294.22 temperature 25 1440 > th dose dependent rect. 15 4
22 1295.93 temperature 25 1440 > th dose dependent rect. 15 17
52 1299.63 temperature 25 1440 > th dose dependent sin 14 NA
70 1301.71 temperature 25 1440 > th dose dependent rect. 18 1
115 1309.64 temperature 25 1440 > th dose dependent rect. 21 1
172 1320.08 temperature 25 1440 > th dose dependent rect. 6 17
192 1321.10 wind 9 43200 > th dose independent rect. 13 20
202 1321.47 wind 7 43200 > th dose dependent rect. 13 21
203 1321.48 wind 9 43200 > th dose dependent rect. 13 19
211 1321.78 wind 9 43200 < th dose independent rect. 13 21
239 1322.68 temperature 30 1440 < th dose independent sin 13 NA
246 1322.95 temperature 25 1440 > th dose dependent no NA NA
262 1323.34 wind 7 43200 > th dose dependent rect. 5 15
266 1323.66 wind 7 43200 > th dose dependent rect. 2 18
272 1323.86 temperature 30 1440 > th dose independent sin 13 NA
289 1324.15 wind 7 43200 > th dose dependent rect. 24 20
293 1324.24 temperature 25 1440 > th dose dependent rect. 21 23
296 1324.29 humidity 80 43200 < th dose dependent rect. 22 1
312 1324.62 temperature 30 1440 < th dose independent rect. 14 13
317 1324.69 temperature 30 1440 < th dose independent rect. 14 11
321 1324.79 temperature 30 1440 < th dose independent rect. 14 17
322 1324.79 wind 7 43200 > th dose dependent sin 23 NA
332 1325.02 temperature 30 1440 < th dose independent rect. 14 8
337 1325.06 temperature 30 1440 < th dose independent rect. 14 5
371 1325.90 temperature 25 1440 > th dose dependent rect. 18 23
376 1326.01 wind 7 43200 > th dose dependent rect. 18 23
397 1326.27 wind 7 43200 > th dose dependent rect. 5 20
437 1326.84 temperature 30 1440 > th dose independent rect. 14 5
512 1327.45 wind 7 43200 > th dose dependent rect. 20 23
533 1327.76 wind 7 43200 > th dose dependent no NA NA
534 1327.77 wind 9 43200 > th dose independent rect. 18 22
538 1327.83 wind 3 43200 > th dose dependent rect. 9 7
560 1328.12 wind 3 43200 > th dose dependent rect. 10 5
590 1328.79 wind 7 43200 < th dose independent rect. 23 18
600 1329.08 humidity 50 1440 < th dose independent rect. 16 1
604 1329.24 humidity 50 1440 < th dose dependent rect. 16 1
617 1329.43 wind 7 43200 > th dose independent rect. 23 18
619 1329.44 wind 7 43200 < th dose independent rect. 2 15
651 1329.66 wind 5 43200 > th dose independent rect. 11 20
653 1329.69 humidity 50 1440 > th dose independent rect. 16 1
661 1329.78 wind 5 43200 < th dose independent rect. 11 20
670 1329.95 wind 9 43200 < th dose independent rect. 18 22
680 1330.08 wind 7 43200 < th dose independent rect. 4 13
705 1330.48 wind 7 43200 > th dose independent rect. 2 15
741 1330.85 temperature 30 1440 < th dose independent rect. 9 18
744 1330.88 temperature 30 1440 < th dose independent rect. 9 16
749 1330.92 temperature 30 1440 < th dose independent rect. 9 22
770 1331.12 temperature 30 1440 < th dose independent rect. 9 13
772 1331.15 temperature 30 1440 < th dose independent rect. 9 10
838 1331.84 wind 9 43200 > th dose independent rect. 2 19
839 1331.84 temperature 30 1440 < th dose independent rect. 17 23
858 1331.99 wind 7 43200 > th dose independent rect. 6 11
863 1332.02 wind 5 43200 > th dose dependent rect. 12 4
866 1332.04 humidity 70 1440 < th dose dependent rect. 17 14
869 1332.05 humidity 70 1440 < th dose dependent rect. 17 3
894 1332.14 wind 9 43200 > th dose independent rect. 6 15
900 1332.15 temperature 30 1440 < th dose independent rect. 6 21
906 1332.16 temperature 30 1440 < th dose independent rect. 24 22
911 1332.17 temperature 30 1440 < th dose independent rect. 2 23
912 1332.18 temperature 30 1440 < th dose independent rect. 6 19
914 1332.19 temperature 30 1440 < th dose independent rect. 24 19
940 1332.28 temperature 30 1440 < th dose independent rect. 21 22
944 1332.29 temperature 30 1440 < th dose independent no NA NA
975 1332.41 temperature 30 1440 < th dose independent rect. 2 20
976 1332.42 temperature 30 1440 < th dose independent rect. 6 16
979 1332.44 humidity 80 43200 < th dose independent rect. 21 2
981 1332.44 temperature 30 1440 < th dose independent rect. 2 17
982 1332.45 temperature 30 1440 < th dose independent rect. 6 13