BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0609200 Os12g0609200|AK067245
         (218 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0609200  Hypothetical protein                                314   4e-86
Os08g0428400  ZIM domain containing protein                        93   2e-19

>Os12g0609200 Hypothetical protein
          Length = 218

 Score =  314 bits (804), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 175/218 (80%), Positives = 175/218 (80%)

Query: 1   FVSEFVVSRDADYLGGGGGPSAAMQWQFPASKXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           FVSEFVVSRDADYLGGGGGPSAAMQWQFPASK                            
Sbjct: 1   FVSEFVVSRDADYLGGGGGPSAAMQWQFPASKVSVHVLQVIVVVGGGEGGGFQGGGGVRP 60

Query: 61  XXXXXXXXTAAPVSPGDAFDGAAAASTMKQRQFGFDGRQQYAAAEQHGHREQGVDSYGVA 120
                   TAAPVSPGDAFDGAAAASTMKQRQFGFDGRQQYAAAEQHGHREQGVDSYGVA
Sbjct: 61  LLPLRVPPTAAPVSPGDAFDGAAAASTMKQRQFGFDGRQQYAAAEQHGHREQGVDSYGVA 120

Query: 121 APHHFPSPSPRHAVQFSQANPSTLRGSVDERFPVFVLLAVSAVPEADGGRRRVRLPAGSP 180
           APHHFPSPSPRHAVQFSQANPSTLRGSVDERFPVFVLLAVSAVPEADGGRRRVRLPAGSP
Sbjct: 121 APHHFPSPSPRHAVQFSQANPSTLRGSVDERFPVFVLLAVSAVPEADGGRRRVRLPAGSP 180

Query: 181 XXXXXXXQEAHRLPRQTGMIRAIIQCMPRKQNHGKTRL 218
                  QEAHRLPRQTGMIRAIIQCMPRKQNHGKTRL
Sbjct: 181 RRGGRRRQEAHRLPRQTGMIRAIIQCMPRKQNHGKTRL 218



>Os08g0428400 ZIM domain containing protein
          Length = 427

 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/113 (54%), Positives = 65/113 (57%), Gaps = 5/113 (4%)

Query: 11  ADYLGGGGGPSAAMQWQFPASKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTA 70
           +DY GGGGG SAAMQWQFPA+K                                      
Sbjct: 23  SDYRGGGGGASAAMQWQFPATKVGAASSAFMSFRSSAAAAREEDPKEAAVFDRFSLSGFR 82

Query: 71  APV--SPGDAFDGAAAASTMKQRQFGFDGRQQYAAAEQHGHREQGVDSYGVAA 121
            P   SPGDAFDGAAA   MKQRQFGF+GRQQYAAA QHGHREQGVDSYGVAA
Sbjct: 83  PPPRPSPGDAFDGAAA---MKQRQFGFNGRQQYAAAAQHGHREQGVDSYGVAA 132



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.133    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,598,210
Number of extensions: 312112
Number of successful extensions: 1188
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1185
Number of HSP's successfully gapped: 2
Length of query: 218
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 121
Effective length of database: 11,971,043
Effective search space: 1448496203
Effective search space used: 1448496203
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)