BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0596200 Os12g0596200|Os12g0596200
         (310 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0596200  Similar to RING-H2 protein                          259   1e-69

>Os12g0596200 Similar to RING-H2 protein
          Length = 310

 Score =  259 bits (663), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 150/272 (55%), Positives = 150/272 (55%)

Query: 39  MIPGSPADDSFATFTTYDNYYHTFSPYGLDDAAIKSLPSAQYLKSSXXXXXXXXXXXXXX 98
           MIPGSPADDSFATFTTYDNYYHTFSPYGLDDAAIKSLPSAQYLKSS              
Sbjct: 39  MIPGSPADDSFATFTTYDNYYHTFSPYGLDDAAIKSLPSAQYLKSSAMAARGGGGGGGAD 98

Query: 99  XXXXXXXVCLLEFADGDELRALPLCAHAFHADCIDVWLRAHASXXXXXXXXXXXXXXXXX 158
                  VCLLEFADGDELRALPLCAHAFHADCIDVWLRAHAS                 
Sbjct: 99  TAARDCAVCLLEFADGDELRALPLCAHAFHADCIDVWLRAHASCPLCRAAVALPPPVASP 158

Query: 159 XXXXXXXXYSFGFERHLLAVEAPSTASPPWRYRLNIXXXXXXXXXXXXXXRSSFWSKRWP 218
                   YSFGFERHLLAVEAPSTASPPWRYRLNI              RSSFWSKRWP
Sbjct: 159 LRAARRRSYSFGFERHLLAVEAPSTASPPWRYRLNIGGGGGGADGPNRGGRSSFWSKRWP 218

Query: 219 SPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSLASEPPSIL 278
           SP                                               MSLASEPPSIL
Sbjct: 219 SPFGGGAAAASRVFSFRSYRSAAAKSSPFSRRRGGTGPGGATAPGGGFFMSLASEPPSIL 278

Query: 279 XXXXXXXXXXXXXXXLRCGDPEALLSPDRLSR 310
                          LRCGDPEALLSPDRLSR
Sbjct: 279 AAARRASAAAAASSRLRCGDPEALLSPDRLSR 310



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.135    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,002,518
Number of extensions: 136106
Number of successful extensions: 546
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 550
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 209
Effective length of database: 11,762,187
Effective search space: 2458297083
Effective search space used: 2458297083
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)