BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0582900 Os12g0582900|AK109606
(380 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0582900 Similar to AP2 domain containing protein RAP2.... 381 e-106
Os07g0204000 91 1e-18
Os07g0575000 83 3e-16
>Os12g0582900 Similar to AP2 domain containing protein RAP2.11 (Fragment)
Length = 380
Score = 381 bits (978), Expect = e-106, Method: Compositional matrix adjust.
Identities = 212/380 (55%), Positives = 212/380 (55%)
Query: 1 MPPSMATARVASPSTDRKRKXXXXXXXXXXXXXXXXXXXXXXXRGRKRFVGVRQRPSGRW 60
MPPSMATARVASPSTDRKRK RGRKRFVGVRQRPSGRW
Sbjct: 1 MPPSMATARVASPSTDRKRKASSEDDIDAAAAAAALTSPLAPARGRKRFVGVRQRPSGRW 60
Query: 61 VAEIKDTIQKIRVWLGTFDTXXXXXXXXXXXXCLLRGANTRTNFWXXXXXXXXXXXXXXX 120
VAEIKDTIQKIRVWLGTFDT CLLRGANTRTNFW
Sbjct: 61 VAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPRPSPPPAAVAPPET 120
Query: 121 XXXXXXXSKVTNLLLLRLKARNQQVVDXXXXXXXXXXXXXXXXXXXXSCQEVFVRSHGEE 180
SKVTNLLLLRLKARNQQVVD SCQEVFVRSHGEE
Sbjct: 121 TTTPALPSKVTNLLLLRLKARNQQVVDAGAAAPQEAALLQLQQQTPASCQEVFVRSHGEE 180
Query: 181 YGFHVDDFLSDACSNEQYXXXXXXXXXXXXXXXXXXXXXXXXFQFMDVAPXXXXXXXXXX 240
YGFHVDDFLSDACSNEQY FQFMDVAP
Sbjct: 181 YGFHVDDFLSDACSNEQYSGDSSLGLDDDDGEVEDEEEEELDFQFMDVAPGASSAAAEAG 240
Query: 241 XXXXXXXCSPFEMVAAELGGAVDVAAHDAMRQMDYERKISASLYALTGVSECLRIRXXXX 300
CSPFEMVAAELGGAVDVAAHDAMRQMDYERKISASLYALTGVSECLRIR
Sbjct: 241 LGGEGALCSPFEMVAAELGGAVDVAAHDAMRQMDYERKISASLYALTGVSECLRIRAAAG 300
Query: 301 XXXXXRDHLTGLREACRKKQKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
RDHLTGLREACRKKQKF
Sbjct: 301 ATAAARDHLTGLREACRKKQKFAAAAAAPPQQQEPSPPPQQPETPASSGGGMSETASGGG 360
Query: 361 XXXDVLMWSSLDLAPICHMA 380
DVLMWSSLDLAPICHMA
Sbjct: 361 GDGDVLMWSSLDLAPICHMA 380
>Os07g0204000
Length = 266
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/57 (70%), Positives = 44/57 (77%)
Query: 48 RFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTXXXXXXXXXXXXCLLRGANTRTNF 104
+FVGVRQRPSGRWVAEIKDT QKIR+WLGTF+T CLLRG+NTRTNF
Sbjct: 40 KFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNF 96
>Os07g0575000
Length = 315
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 45/68 (66%), Gaps = 7/68 (10%)
Query: 44 RGRKR-------FVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTXXXXXXXXXXXXCLLR 96
RGRK+ FVGVRQRPSGRWVAEIKDT QKIR+WLGTF+T LLR
Sbjct: 39 RGRKKGSTSHSKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETADAAARAYDEAARLLR 98
Query: 97 GANTRTNF 104
GA RTNF
Sbjct: 99 GAEARTNF 106
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.135 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,623,868
Number of extensions: 135749
Number of successful extensions: 506
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 524
Number of HSP's successfully gapped: 3
Length of query: 380
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 277
Effective length of database: 11,657,759
Effective search space: 3229199243
Effective search space used: 3229199243
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 157 (65.1 bits)