BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0578300 Os12g0578300|AK100503
         (618 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0578300  Calmodulin-binding, plant family protein           1088   0.0  

>Os12g0578300 Calmodulin-binding, plant family protein
          Length = 618

 Score = 1088 bits (2814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 546/618 (88%), Positives = 546/618 (88%)

Query: 1   MTEEVVKEVIIVSTPESSKSTSGDFPVNSLENVDVSSVPSDLKRKEKSVPHYLRASTGSC 60
           MTEEVVKEVIIVSTPESSKSTSGDFPVNSLENVDVSSVPSDLKRKEKSVPHYLRASTGSC
Sbjct: 1   MTEEVVKEVIIVSTPESSKSTSGDFPVNSLENVDVSSVPSDLKRKEKSVPHYLRASTGSC 60

Query: 61  HDSCKFGAHHSPEPKKYWPVRRRRHQDRANAGCGKQGQDEIQTQKGRSRNKDLELKICLV 120
           HDSCKFGAHHSPEPKKYWPVRRRRHQDRANAGCGKQGQDEIQTQKGRSRNKDLELKICLV
Sbjct: 61  HDSCKFGAHHSPEPKKYWPVRRRRHQDRANAGCGKQGQDEIQTQKGRSRNKDLELKICLV 120

Query: 121 KDGNVHDKPEFIEVKKPPIEMASDNSETSPCVQDQLSSAEESKRVEDGADLPCGDDKFLI 180
           KDGNVHDKPEFIEVKKPPIEMASDNSETSPCVQDQLSSAEESKRVEDGADLPCGDDKFLI
Sbjct: 121 KDGNVHDKPEFIEVKKPPIEMASDNSETSPCVQDQLSSAEESKRVEDGADLPCGDDKFLI 180

Query: 181 PDGNAACFVDGESSEGAVSIELEMPLXXXXXXXXXXXXXXXXXPPECVYKAGEQLLVDDM 240
           PDGNAACFVDGESSEGAVSIELEMPL                 PPECVYKAGEQLLVDDM
Sbjct: 181 PDGNAACFVDGESSEGAVSIELEMPLAIQDSDASDDHIADAISPPECVYKAGEQLLVDDM 240

Query: 241 CDDGSGNECAGSEKKSTQIVMASEKREKSGHGTKSKSLYNVSVKPKVKETSTATRSNASS 300
           CDDGSGNECAGSEKKSTQIVMASEKREKSGHGTKSKSLYNVSVKPKVKETSTATRSNASS
Sbjct: 241 CDDGSGNECAGSEKKSTQIVMASEKREKSGHGTKSKSLYNVSVKPKVKETSTATRSNASS 300

Query: 301 QKIVRTLDRKASGTTIESSNGSKVVRATKFNRDKKFRSTVASNVPKVKEIKVTSPATVMD 360
           QKIVRTLDRKASGTTIESSNGSKVVRATKFNRDKKFRSTVASNVPKVKEIKVTSPATVMD
Sbjct: 301 QKIVRTLDRKASGTTIESSNGSKVVRATKFNRDKKFRSTVASNVPKVKEIKVTSPATVMD 360

Query: 361 QSSKPTRQSKLKSLVANDAPSPSVNSEKQTDRKMTVMNVAKNARVWQKKEEEKISPVXXX 420
           QSSKPTRQSKLKSLVANDAPSPSVNSEKQTDRKMTVMNVAKNARVWQKKEEEKISPV   
Sbjct: 361 QSSKPTRQSKLKSLVANDAPSPSVNSEKQTDRKMTVMNVAKNARVWQKKEEEKISPVKLS 420

Query: 421 XXXXXXXXXXXXXXMRAVKKEKPASLVKSNKKVYGAENAVADVKEKNLKSASPXXXXXXX 480
                         MRAVKKEKPASLVKSNKKVYGAENAVADVKEKNLKSASP       
Sbjct: 421 RSINLSSKSLLSIKMRAVKKEKPASLVKSNKKVYGAENAVADVKEKNLKSASPKVRKVEV 480

Query: 481 XXXXXXXXXXNSATPRTENTRQPKSSTIPAQSPRKLTFRRGKVLNLQSNSESSSTPRRLR 540
                     NSATPRTENTRQPKSSTIPAQSPRKLTFRRGKVLNLQSNSESSSTPRRLR
Sbjct: 481 SKKESRSQKENSATPRTENTRQPKSSTIPAQSPRKLTFRRGKVLNLQSNSESSSTPRRLR 540

Query: 541 FRPAKTVEDSNRSKESTXXXXXXXXXXXXXXXXXXXXXPEVVILRHQDVRDKKKNEQGLL 600
           FRPAKTVEDSNRSKEST                     PEVVILRHQDVRDKKKNEQGLL
Sbjct: 541 FRPAKTVEDSNRSKESTRGRRKSDSAASSGSKDSGSSKPEVVILRHQDVRDKKKNEQGLL 600

Query: 601 NNVIEETASKLVRRGRAR 618
           NNVIEETASKLVRRGRAR
Sbjct: 601 NNVIEETASKLVRRGRAR 618



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.307    0.123    0.336 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,881,782
Number of extensions: 694754
Number of successful extensions: 1953
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1946
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 511
Effective length of database: 11,448,903
Effective search space: 5850389433
Effective search space used: 5850389433
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 159 (65.9 bits)