Os12g0578300 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0578300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Calmodulin-binding, plant family protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	3.67	(0.0464)	R²	:	0.083
β₁	:	-0.995	(0.17)	R²_dD	:	0.0714	R²_D	:	0.0456
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	--	(--)	R²_dE	:	--	R²_E	:	--
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.37	(0.0992)	R²_dN8	:	0.0374	R²_N8	:	0.0117
σ	:	0.872
deviance	:	348.2
__

_____

C
peak time of C	:	--
E
wheather	:	--
threshold	:	--
memory length	:	--
response mode	:	--
dose dependency	:	--
G
type of G	:	--
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
317.37	0.837	3.82	-2.14	0.184	0.978	0.0413	-3.47	-0.776	1.25	16	1400	--	--
327.94	0.843	3.72	-1.33	0.167	1	-0.114	--	-0.552	1.02	14.31	1365	--	--
317.38	0.83	3.82	-2.14	0.185	0.979	--	-3.47	-0.776	1.19	16	1402	--	--
328.01	0.844	3.72	-1.32	0.163	0.997	--	--	-0.556	1.06	14.18	1361	--	--
319.16	0.832	3.82	-2.11	--	1.05	--	-3.41	-0.771	--	15.9	1305	--	--
344.81	0.871	3.68	-1.01	0.234	--	-0.077	--	-0.375	1.46	--	--	--	--
344.84	0.87	3.68	-1	0.234	--	--	--	-0.375	1.5	--	--	--	--
329.01	0.845	3.72	-1.32	--	1.07	--	--	-0.558	--	14.1	1153	--	--
367.61	0.893	3.67	--	0.169	0.454	--	--	-0.329	0.749	14.3	1285	--	--
348.2	0.872	3.67	-0.995	--	--	--	--	-0.37	--	--	--	--	--
371.42	0.902	3.65	--	0.217	--	--	--	-0.263	1.34	--	--	--	--
368.86	0.895	3.67	--	--	0.539	--	--	-0.333	--	13.6	1031	--	--
374.31	0.903	3.65	--	--	--	--	--	-0.259	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	305.69	wind	9	43200	> th	dose dependent	rect.	10	4
2	306.08	wind	1	43200	< th	dose dependent	rect.	8	4
4	306.57	wind	3	43200	< th	dose independent	rect.	2	1
5	306.61	wind	3	43200	> th	dose independent	rect.	2	1
6	306.92	wind	9	43200	> th	dose dependent	rect.	10	6
7	307.10	wind	9	43200	> th	dose independent	rect.	7	7
12	307.26	wind	9	43200	> th	dose dependent	rect.	13	19
14	307.28	wind	3	43200	> th	dose independent	rect.	19	22
15	307.29	wind	3	43200	> th	dose independent	rect.	19	9
19	307.37	wind	9	43200	> th	dose independent	rect.	2	12
20	307.43	humidity	90	14400	> th	dose dependent	rect.	20	5
21	307.46	humidity	90	14400	> th	dose dependent	rect.	22	1
25	307.52	wind	1	43200	< th	dose dependent	rect.	2	1
27	307.54	humidity	90	14400	> th	dose dependent	sin	15	NA
31	307.56	wind	1	43200	< th	dose dependent	rect.	24	2
33	307.58	wind	3	43200	< th	dose independent	rect.	19	9
34	307.59	humidity	90	14400	> th	dose dependent	rect.	18	7
37	307.63	wind	3	43200	< th	dose independent	rect.	19	21
44	307.69	humidity	90	14400	> th	dose dependent	rect.	14	17
45	307.69	humidity	90	14400	> th	dose dependent	rect.	12	18
54	307.79	wind	3	43200	> th	dose independent	rect.	20	7
59	307.83	humidity	90	14400	> th	dose dependent	rect.	9	21
65	307.88	wind	3	43200	< th	dose independent	rect.	19	5
73	307.96	wind	3	43200	> th	dose independent	rect.	19	5
75	307.97	wind	3	43200	> th	dose independent	rect.	18	11
113	308.18	wind	3	43200	> th	dose independent	rect.	1	23
120	308.19	wind	9	43200	> th	dose dependent	rect.	10	10
124	308.22	wind	3	43200	< th	dose independent	rect.	20	7
131	308.25	wind	3	43200	> th	dose independent	rect.	8	23
134	308.26	wind	9	43200	> th	dose independent	rect.	13	21
142	308.29	wind	9	43200	> th	dose dependent	sin	19	NA
151	308.31	humidity	90	14400	> th	dose dependent	rect.	15	12
152	308.31	humidity	90	14400	> th	dose dependent	rect.	2	21
154	308.32	humidity	90	14400	> th	dose dependent	rect.	2	23
155	308.33	wind	3	43200	> th	dose independent	rect.	1	16
170	308.36	humidity	90	14400	> th	dose dependent	rect.	18	22
178	308.40	wind	3	43200	> th	dose independent	rect.	6	23
188	308.43	humidity	90	14400	> th	dose dependent	rect.	5	2
192	308.45	wind	9	43200	> th	dose independent	rect.	18	20
214	308.52	wind	3	43200	> th	dose independent	no	NA	NA
215	308.52	wind	3	43200	> th	dose independent	rect.	13	23
227	308.57	humidity	90	14400	> th	dose dependent	no	NA	NA
231	308.58	wind	3	43200	> th	dose independent	sin	12	NA
232	308.58	wind	3	43200	> th	dose independent	rect.	6	9
238	308.60	wind	3	43200	< th	dose independent	rect.	1	23
241	308.60	humidity	90	14400	> th	dose dependent	rect.	20	23
260	308.69	wind	3	43200	> th	dose independent	rect.	18	13
267	308.70	wind	3	43200	< th	dose independent	rect.	8	23
287	308.76	humidity	90	14400	> th	dose dependent	rect.	4	4
288	308.77	wind	3	43200	< th	dose independent	rect.	1	16
294	308.78	wind	3	43200	< th	dose independent	rect.	6	9
316	308.87	wind	9	43200	> th	dose independent	rect.	18	22
318	308.88	wind	3	43200	< th	dose independent	rect.	6	23
323	308.90	wind	3	43200	< th	dose independent	rect.	13	23
336	308.93	wind	9	43200	> th	dose dependent	rect.	10	22
349	309.00	wind	3	43200	> th	dose independent	rect.	8	7
353	309.01	wind	3	43200	< th	dose independent	no	NA	NA
357	309.02	radiation	10	43200	< th	dose dependent	rect.	9	2
363	309.05	wind	1	43200	> th	dose independent	rect.	8	1
365	309.05	wind	9	43200	> th	dose independent	rect.	15	23
383	309.11	wind	3	43200	< th	dose independent	sin	12	NA
392	309.13	wind	3	43200	> th	dose independent	rect.	16	15
396	309.15	wind	3	43200	> th	dose independent	rect.	9	5
398	309.16	wind	3	43200	< th	dose independent	rect.	9	5
405	309.18	wind	9	43200	< th	dose independent	rect.	7	7
408	309.18	wind	9	43200	> th	dose dependent	rect.	10	17
412	309.19	wind	3	43200	< th	dose independent	rect.	18	13
423	309.20	wind	9	43200	> th	dose dependent	rect.	10	14
434	309.22	wind	9	43200	< th	dose independent	rect.	5	9
452	309.26	wind	3	43200	< th	dose independent	rect.	11	23
454	309.27	wind	3	43200	< th	dose independent	rect.	8	7
456	309.27	humidity	90	14400	> th	dose dependent	rect.	4	6
470	309.33	wind	3	43200	> th	dose independent	sin	2	NA
494	309.43	wind	9	43200	> th	dose independent	sin	3	NA
498	309.44	wind	9	43200	> th	dose independent	rect.	23	20
500	309.45	wind	9	43200	< th	dose independent	rect.	2	12
510	309.48	wind	3	43200	> th	dose independent	rect.	4	13
550	309.59	humidity	80	43200	< th	dose dependent	rect.	4	1
559	309.62	wind	3	43200	< th	dose independent	sin	2	NA
565	309.63	radiation	10	43200	> th	dose independent	rect.	9	1
567	309.63	wind	9	43200	< th	dose independent	rect.	13	22
590	309.67	wind	3	43200	< th	dose independent	rect.	16	15
593	309.67	wind	5	43200	< th	dose dependent	rect.	19	5
605	309.70	wind	3	43200	> th	dose independent	rect.	16	18
627	309.76	wind	3	43200	< th	dose independent	rect.	4	12
647	309.80	wind	1	43200	> th	dose dependent	rect.	6	21
657	309.83	wind	9	43200	> th	dose independent	rect.	2	17
668	309.87	wind	1	43200	> th	dose dependent	rect.	9	22
676	309.89	wind	5	43200	< th	dose dependent	rect.	19	22
708	309.98	wind	9	43200	< th	dose dependent	rect.	6	21
722	310.02	humidity	80	43200	< th	dose dependent	rect.	23	1
736	310.06	humidity	80	43200	> th	dose independent	rect.	21	8
742	310.07	humidity	80	43200	< th	dose dependent	rect.	21	9
748	310.08	wind	9	43200	< th	dose dependent	rect.	9	22
756	310.10	wind	7	43200	< th	dose dependent	rect.	19	7
759	310.11	wind	1	43200	> th	dose dependent	rect.	6	18
762	310.11	wind	1	43200	> th	dose dependent	rect.	13	22
763	310.12	wind	9	43200	> th	dose independent	rect.	5	14
805	310.18	wind	9	43200	< th	dose independent	rect.	23	17
821	310.20	wind	1	43200	> th	dose dependent	rect.	1	23
822	310.20	wind	1	43200	> th	dose dependent	rect.	18	23
828	310.21	wind	1	43200	> th	dose dependent	rect.	8	20
834	310.22	wind	1	43200	> th	dose dependent	rect.	21	23
844	310.24	wind	5	43200	< th	dose dependent	rect.	8	23
852	310.26	wind	1	43200	> th	dose dependent	rect.	6	11
880	310.31	wind	1	43200	> th	dose independent	rect.	8	3
881	310.31	wind	1	43200	< th	dose independent	rect.	8	3
890	310.32	wind	1	43200	> th	dose dependent	no	NA	NA
896	310.32	wind	5	43200	< th	dose dependent	rect.	1	23
908	310.34	humidity	90	14400	> th	dose dependent	sin	5	NA
916	310.35	humidity	90	14400	> th	dose independent	rect.	2	7
926	310.36	wind	1	43200	> th	dose dependent	rect.	22	20
927	310.36	wind	9	43200	< th	dose dependent	rect.	13	22
952	310.40	humidity	90	14400	> th	dose dependent	rect.	3	13
966	310.41	wind	9	43200	< th	dose dependent	rect.	18	23