BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0564400 Os12g0564400|AK059949
         (249 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0564400  Similar to Thylakoid lumenal 21.5 kDa protein,...   441   e-124
Os07g0275100  Photosystem II oxygen evolving complex protein...   146   1e-35

>Os12g0564400 Similar to Thylakoid lumenal 21.5 kDa protein, chloroplast
           precursor
          Length = 249

 Score =  441 bits (1134), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 225/249 (90%), Positives = 225/249 (90%)

Query: 1   MAIVAVTXXXXXXXXXXXXXXXXXXXXXXXXCATHTVPRRNVLSTMLSTSTVFLFGPKQI 60
           MAIVAVT                        CATHTVPRRNVLSTMLSTSTVFLFGPKQI
Sbjct: 1   MAIVAVTAGGRRPPCRRVPPAASPPARLSCRCATHTVPRRNVLSTMLSTSTVFLFGPKQI 60

Query: 61  TLAETTGGTFREYIDTFDGYSFLYPKSWIQVRGAGADIFFRDPFFLDENMSVEISSPSSS 120
           TLAETTGGTFREYIDTFDGYSFLYPKSWIQVRGAGADIFFRDPFFLDENMSVEISSPSSS
Sbjct: 61  TLAETTGGTFREYIDTFDGYSFLYPKSWIQVRGAGADIFFRDPFFLDENMSVEISSPSSS 120

Query: 121 KYMTVEDLGPPEKAAERVLQQYLTEFMSTRLGVRRTSNILSASSKVADDGKLYYEVEVNI 180
           KYMTVEDLGPPEKAAERVLQQYLTEFMSTRLGVRRTSNILSASSKVADDGKLYYEVEVNI
Sbjct: 121 KYMTVEDLGPPEKAAERVLQQYLTEFMSTRLGVRRTSNILSASSKVADDGKLYYEVEVNI 180

Query: 181 KSFASNNELAVMPQDRVQRLEWDRRYLSVLGVENKRLYELRLQSPEKVFKEEEGDLRRVM 240
           KSFASNNELAVMPQDRVQRLEWDRRYLSVLGVENKRLYELRLQSPEKVFKEEEGDLRRVM
Sbjct: 181 KSFASNNELAVMPQDRVQRLEWDRRYLSVLGVENKRLYELRLQSPEKVFKEEEGDLRRVM 240

Query: 241 DSFRVNKTA 249
           DSFRVNKTA
Sbjct: 241 DSFRVNKTA 249



>Os07g0275100 Photosystem II oxygen evolving complex protein PsbP family protein
          Length = 80

 Score =  146 bits (368), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 70/74 (94%), Positives = 73/74 (98%)

Query: 176 VEVNIKSFASNNELAVMPQDRVQRLEWDRRYLSVLGVENKRLYELRLQSPEKVFKEEEGD 235
           ++VNIKSFASNNELAVMPQDRVQRLEWDRRYLSVLGVENKRLYELRLQSPE+VFKEEEGD
Sbjct: 7   LQVNIKSFASNNELAVMPQDRVQRLEWDRRYLSVLGVENKRLYELRLQSPEQVFKEEEGD 66

Query: 236 LRRVMDSFRVNKTA 249
           LRRVMDSFRVNKT 
Sbjct: 67  LRRVMDSFRVNKTV 80



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.133    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,249,422
Number of extensions: 287375
Number of successful extensions: 660
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 661
Number of HSP's successfully gapped: 2
Length of query: 249
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 151
Effective length of database: 11,918,829
Effective search space: 1799743179
Effective search space used: 1799743179
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)