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Os12g0564400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Thylakoid lumenal 21.5 kDa protein, chloroplast precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.2 (0.0224) R2 : 0.543
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.16 (0.0558) R2dC : 0.434 R2C : 0.402
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.491 (0.0471) R2dN8 : 0.141 R2N8 : 0.11
σ : 0.422
deviance : 81.32
__
_____
C
peak time of C : 21
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
68.85 0.39 11.2 -0.286 1.2 0.827 0.0515 1.68 -0.571 21.9 29.89 269 -- --
71.56 0.394 11.2 -0.314 1.17 0.751 -0.254 -- -0.58 21.9 30 319 -- --
68.85 0.386 11.2 -0.286 1.2 0.828 -- 1.66 -0.571 21.9 29.87 268 -- --
71.73 0.394 11.2 -0.32 1.16 0.733 -- -- -0.568 21.9 24.78 318 -- --
97.79 0.461 11.2 -0.45 -- 1.41 -- 1.5 -0.689 -- 0.001348 977 -- --
78.93 0.416 11.2 -0.302 1.16 -- -0.144 -- -0.524 21 -- -- -- --
79 0.416 11.2 -0.297 1.16 -- -- -- -0.524 21 -- -- -- --
93.53 0.45 11.2 -0.426 -- 1.35 -- -- -0.713 -- -10.16 977 -- --
74.1 0.401 11.2 -- 1.2 0.717 -- -- -0.539 21.9 24.34 274 -- --
155.74 0.583 11.2 -0.296 -- -- -- -- -0.531 -- -- -- -- --
81.32 0.422 11.2 -- 1.16 -- -- -- -0.491 21 -- -- -- --
98.27 0.462 11.2 -- -- 1.31 -- -- -0.661 -- -15.8 975 -- --
158.05 0.587 11.2 -- -- -- -- -- -0.499 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 60.57 temperature 20.0 270 > th dose independent rect. 4 5
3 60.82 temperature 20.0 90 > th dose dependent rect. 5 4
4 61.07 temperature 20.0 270 > th dose independent rect. 5 2
20 63.17 temperature 20.0 90 > th dose independent rect. 5 18
27 63.57 wind 7.0 270 < th dose independent rect. 9 19
35 63.87 radiation 40.0 270 < th dose independent rect. 3 20
42 64.15 radiation 30.0 30 < th dose independent rect. 6 4
45 64.21 radiation 40.0 270 < th dose dependent rect. 4 6
60 64.45 radiation 30.0 270 < th dose independent rect. 4 6
64 64.46 temperature 10.0 90 > th dose dependent rect. 9 21
68 64.53 radiation 40.0 270 < th dose independent rect. 3 8
70 64.54 radiation 40.0 270 < th dose dependent rect. 3 20
72 64.58 radiation 40.0 270 < th dose independent rect. 4 18
76 64.60 wind 7.0 270 < th dose independent rect. 8 21
81 64.62 humidity 70.0 30 > th dose independent rect. 6 4
87 64.67 temperature 20.0 270 > th dose dependent rect. 8 7
92 64.71 temperature 25.0 270 > th dose independent rect. 9 6
118 64.97 temperature 10.0 10 > th dose dependent rect. 10 20
133 65.06 radiation 10.0 270 < th dose independent rect. 5 2
134 65.06 temperature 20.0 270 > th dose independent rect. 3 20
142 65.19 radiation 1.0 90 > th dose independent rect. 6 3
148 65.21 humidity 90.0 90 < th dose independent rect. 6 3
152 65.26 precipitation 0.1 270 < th dose independent rect. 9 19
154 65.26 precipitation 0.1 270 < th dose dependent rect. 9 19
155 65.27 wind 7.0 270 < th dose independent rect. 10 17
157 65.30 temperature 30.0 270 < th dose independent rect. 4 5
162 65.34 temperature 20.0 90 > th dose independent rect. 5 8
166 65.37 temperature 30.0 10 < th dose independent rect. 6 4
172 65.40 radiation 1.0 90 < th dose dependent sin 8 NA
182 65.47 humidity 70.0 270 > th dose independent rect. 4 5
186 65.48 radiation 40.0 270 < th dose independent rect. 12 11
203 65.60 radiation 40.0 90 < th dose independent rect. 6 17
204 65.61 temperature 10.0 270 > th dose dependent rect. 8 8
205 65.62 wind 9.0 270 < th dose independent rect. 4 5
206 65.62 temperature 10.0 270 > th dose independent rect. 4 5
208 65.62 humidity 50.0 270 > th dose independent rect. 4 5
209 65.62 atmosphere 995.0 270 > th dose independent rect. 4 5
210 65.62 atmosphere 1015.0 270 < th dose independent rect. 4 5
211 65.62 wind 5.0 90 < th dose independent rect. 23 7
212 65.62 temperature 10.0 270 > th dose independent rect. 9 19
213 65.63 radiation 20.0 90 < th dose independent rect. 6 18
214 65.64 temperature 10.0 270 > th dose dependent rect. 23 16
217 65.66 temperature 30.0 90 < th dose independent rect. 6 3
228 65.70 precipitation 0.1 90 < th dose independent rect. 6 3
229 65.70 precipitation 0.1 270 < th dose independent rect. 4 5
231 65.70 precipitation 0.1 90 < th dose dependent rect. 6 3
232 65.70 precipitation 0.1 270 < th dose dependent rect. 4 5
233 65.71 radiation 1.0 90 < th dose independent sin 8 NA
234 65.71 wind 9.0 90 < th dose independent rect. 6 3
235 65.71 temperature 10.0 90 > th dose independent rect. 6 3
238 65.71 atmosphere 995.0 90 > th dose independent rect. 6 3
239 65.71 atmosphere 1015.0 90 < th dose independent rect. 6 3
240 65.71 temperature 10.0 90 > th dose independent rect. 9 21
249 65.74 wind 9.0 10 < th dose independent rect. 10 20
278 65.82 radiation 40.0 90 < th dose dependent rect. 6 17
279 65.83 wind 5.0 270 < th dose independent rect. 21 7
284 65.85 precipitation 0.1 270 < th dose independent rect. 7 22
285 65.85 precipitation 0.1 270 < th dose dependent rect. 7 22
286 65.86 precipitation 0.1 10 < th dose independent rect. 10 20
288 65.86 precipitation 0.1 10 < th dose dependent rect. 10 20
289 65.87 wind 1.0 90 > th dose independent rect. 6 3
296 65.92 radiation 1.0 90 > th dose independent sin 8 NA
300 65.95 wind 9.0 10 < th dose independent rect. 6 4
301 65.95 temperature 10.0 10 > th dose independent rect. 6 4
304 65.95 atmosphere 995.0 10 > th dose independent rect. 6 4
305 65.95 atmosphere 1015.0 10 < th dose independent rect. 6 4
306 65.95 temperature 10.0 10 > th dose independent rect. 10 20
308 65.96 precipitation 0.1 10 < th dose independent rect. 6 4
309 65.96 precipitation 0.1 10 < th dose dependent rect. 6 4
312 65.99 precipitation 0.1 90 < th dose independent rect. 9 21
313 65.99 precipitation 0.1 90 < th dose dependent rect. 9 21
317 66.02 wind 9.0 90 < th dose dependent rect. 6 3
324 66.06 wind 1.0 10 > th dose independent rect. 6 4
345 66.10 temperature 10.0 270 > th dose independent rect. 7 22
346 66.10 humidity 50.0 270 > th dose dependent rect. 4 5
347 66.11 atmosphere 1000.0 30 > th dose independent rect. 6 17
354 66.13 radiation 40.0 270 < th dose dependent rect. 5 2
363 66.16 humidity 50.0 30 > th dose dependent rect. 6 4
366 66.17 radiation 1.0 10 > th dose independent rect. 6 4
385 66.21 wind 9.0 10 < th dose dependent rect. 6 4
388 66.22 radiation 40.0 10 < th dose dependent rect. 6 18
389 66.23 humidity 50.0 270 > th dose dependent rect. 5 2
396 66.26 temperature 30.0 270 < th dose independent rect. 3 7
406 66.28 wind 9.0 270 < th dose dependent rect. 9 19
412 66.32 radiation 1.0 90 < th dose independent rect. 23 8
429 66.36 wind 1.0 270 > th dose independent rect. 9 19
431 66.37 radiation 20.0 10 < th dose independent rect. 6 18
437 66.39 temperature 20.0 10 > th dose dependent rect. 10 8
448 66.45 radiation 1.0 90 < th dose dependent rect. 23 8
449 66.46 temperature 25.0 30 > th dose independent rect. 10 8
457 66.47 radiation 1.0 90 < th dose dependent rect. 23 12
488 66.56 temperature 25.0 10 > th dose dependent rect. 22 11
500 66.58 temperature 10.0 1440 > th dose independent rect. 7 4
503 66.58 atmosphere 995.0 1440 > th dose independent rect. 7 4
506 66.58 temperature 10.0 1440 > th dose independent rect. 11 20
552 66.68 wind 7.0 270 < th dose independent rect. 23 15
566 66.72 radiation 1.0 90 < th dose independent rect. 23 12
572 66.74 atmosphere 995.0 270 > th dose independent rect. 17 15
596 66.78 atmosphere 1015.0 1440 < th dose independent rect. 7 3
633 66.84 radiation 40.0 10 < th dose dependent rect. 6 4
637 66.85 temperature 30.0 270 < th dose dependent rect. 3 10
655 66.87 wind 9.0 270 < th dose dependent rect. 4 5
685 66.93 precipitation 0.1 90 < th dose independent rect. 23 7
686 66.93 precipitation 0.1 90 < th dose dependent rect. 23 7
698 66.97 radiation 20.0 90 < th dose dependent rect. 23 7
705 67.00 radiation 20.0 10 < th dose independent rect. 6 20
711 67.01 atmosphere 1015.0 10 < th dose dependent rect. 10 20
746 67.09 wind 9.0 270 < th dose independent rect. 8 9
750 67.09 wind 9.0 10 < th dose dependent rect. 23 7
763 67.12 atmosphere 995.0 90 > th dose dependent rect. 6 3
784 67.14 temperature 10.0 90 > th dose independent rect. 23 7
785 67.14 temperature 30.0 90 < th dose independent rect. 23 7
786 67.14 humidity 50.0 90 > th dose independent rect. 23 7
789 67.14 atmosphere 995.0 90 > th dose independent rect. 23 7
790 67.14 radiation 20.0 90 < th dose independent rect. 23 7
806 67.16 wind 9.0 270 < th dose dependent rect. 21 7
812 67.18 wind 9.0 90 < th dose dependent rect. 23 7
816 67.19 atmosphere 995.0 10 > th dose dependent rect. 6 4
829 67.22 wind 5.0 270 < th dose independent rect. 23 4
835 67.22 atmosphere 1015.0 10 < th dose independent rect. 10 20
843 67.23 radiation 40.0 10 < th dose dependent rect. 6 20
861 67.26 precipitation 0.1 270 < th dose independent rect. 21 7
865 67.26 precipitation 0.1 270 < th dose dependent rect. 21 7
914 67.33 atmosphere 995.0 10 > th dose dependent rect. 6 17
931 67.37 humidity 50.0 10 > th dose independent rect. 10 20
957 67.40 atmosphere 1015.0 90 < th dose independent rect. 6 17
969 67.42 radiation 30.0 270 < th dose independent rect. 17 15
973 67.43 wind 1.0 270 > th dose independent rect. 22 6