BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0552800 Os12g0552800|AK069589
         (516 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0552800  Conserved hypothetical protein                      624   e-179

>Os12g0552800 Conserved hypothetical protein
          Length = 516

 Score =  624 bits (1610), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 328/487 (67%), Positives = 328/487 (67%)

Query: 30  KARVCVRAPHXXXXXXXXXXXXXXXXXFAWCXXXXXXXXXXXXXXXXXXAKNHGEHPAKX 89
           KARVCVRAPH                 FAWC                  AKNHGEHPAK 
Sbjct: 30  KARVCVRAPHGAGALLVVGGAVVGAAVFAWCRRRCRSDGGEGEGERKEGAKNHGEHPAKE 89

Query: 90  XXXXXXXXXXXXXXXAQRLHQIYQNLSRDNVEVGVNGSDGKATDELYQIQKDDEVVPNGD 149
                          AQRLHQIYQNLSRDNVEVGVNGSDGKATDELYQIQKDDEVVPNGD
Sbjct: 90  EGGLDGGVVEGEQGDAQRLHQIYQNLSRDNVEVGVNGSDGKATDELYQIQKDDEVVPNGD 149

Query: 150 KIVLSELVTEAVEKYDHGSIKDCAEIAPDGMVNEAVETYNHNSERDCAEITAHVMDTENV 209
           KIVLSELVTEAVEKYDHGSIKDCAEIAPDGMVNEAVETYNHNSERDCAEITAHVMDTENV
Sbjct: 150 KIVLSELVTEAVEKYDHGSIKDCAEIAPDGMVNEAVETYNHNSERDCAEITAHVMDTENV 209

Query: 210 TEDDDNSGKNDAXXXXXXXXXXXXXXXXXXTFSLSSPDITLEEHDNNNCVDQDXXXXXXX 269
           TEDDDNSGKNDA                  TFSLSSPDITLEEHDNNNCVDQD       
Sbjct: 210 TEDDDNSGKNDAENEIIVNENEGEENSAENTFSLSSPDITLEEHDNNNCVDQDTASTETT 269

Query: 270 XXXEKVMHQEQVSEQVKMAETAEVKPAEETETTPMVQTEVKLXXXXXXXXXXXXXXVKPX 329
              EKVMHQEQVSEQVKMAETAEVKPAEETETTPMVQTEVKL              VKP 
Sbjct: 270 PTTEKVMHQEQVSEQVKMAETAEVKPAEETETTPMVQTEVKLEEETETTPVAETTEVKPA 329

Query: 330 XXXXXXXXXXXLQVKPAEETDTTSMXXXXXXXXXXXXXXXXXXXXXXVKLAEETETIPMA 389
                      LQVKPAEETDTTSM                      VKLAEETETIPMA
Sbjct: 330 EETETSTVAETLQVKPAEETDTTSMAETAELKLAEETETASMAETAEVKLAEETETIPMA 389

Query: 390 ETAEVKLAEEKVMXXXXXXXXXXXXXXXYVKPVNSLAYSSVPSLLKRTVKKGQVNPRWNE 449
           ETAEVKLAEEKVM               YVKPVNSLAYSSVPSLLKRTVKKGQVNPRWNE
Sbjct: 390 ETAEVKLAEEKVMKKNEFEHEEENSKEEYVKPVNSLAYSSVPSLLKRTVKKGQVNPRWNE 449

Query: 450 TGMKLEQDCTNGELNEHDLTKAGATAMGGAVLTMARRPDSMXXXXXXXXXXXXXXXXXRL 509
           TGMKLEQDCTNGELNEHDLTKAGATAMGGAVLTMARRPDSM                 RL
Sbjct: 450 TGMKLEQDCTNGELNEHDLTKAGATAMGGAVLTMARRPDSMAILALIVAVTIAITIVVRL 509

Query: 510 YVPLQAT 516
           YVPLQAT
Sbjct: 510 YVPLQAT 516



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.308    0.124    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,201,133
Number of extensions: 311100
Number of successful extensions: 546
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 523
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 411
Effective length of database: 11,553,331
Effective search space: 4748419041
Effective search space used: 4748419041
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 158 (65.5 bits)