Os12g0552800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0552800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.62 | 0.44 | 9.81 | 1.17 | 0.854 | -2.57 | -0.325 | -3.57 | 0.524 | 6.59 | 0.7578 | 1429 | -- | -- |
| 89.94 | 0.442 | 9.87 | 0.899 | 0.839 | -1.76 | -0.233 | -- | 0.449 | 6.17 | 2.276 | 1440 | -- | -- |
| 87.87 | 0.437 | 9.81 | 1.17 | 0.853 | -2.58 | -- | -3.59 | 0.523 | 6.54 | 0.748 | 1428 | -- | -- |
| 89.95 | 0.442 | 9.87 | 0.887 | 0.838 | -1.82 | -- | -- | 0.455 | 5.87 | 2.248 | 1452 | -- | -- |
| 124.1 | 0.519 | 9.82 | 1.21 | -- | -2.69 | -- | -3.92 | 0.549 | -- | 0.7353 | 1445 | -- | -- |
| 129.69 | 0.534 | 9.81 | 1.25 | 0.862 | -- | -0.189 | -- | 0.707 | 6.2 | -- | -- | -- | -- |
| 129.77 | 0.533 | 9.81 | 1.25 | 0.861 | -- | -- | -- | 0.708 | 6.15 | -- | -- | -- | -- |
| 125.79 | 0.522 | 9.87 | 0.913 | -- | -1.84 | -- | -- | 0.477 | -- | 2.34 | 1450 | -- | -- |
| 107.33 | 0.483 | 9.87 | -- | 0.881 | -2.37 | -- | -- | 0.385 | 5.12 | 1.114 | 1475 | -- | -- |
| 168.23 | 0.606 | 9.83 | 1.27 | -- | -- | -- | -- | 0.727 | -- | -- | -- | -- | -- |
| 170.85 | 0.611 | 9.84 | -- | 0.879 | -- | -- | -- | 0.569 | 6.07 | -- | -- | -- | -- |
| 144.57 | 0.56 | 9.91 | -- | -- | -2.31 | -- | -- | 0.348 | -- | 1.345 | 1450 | -- | -- |
| 210.95 | 0.678 | 9.86 | -- | -- | -- | -- | -- | 0.586 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 84.74 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 3 | 84.92 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 6 | 85.35 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 9 | 85.65 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 15 | 86.00 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 11 |
| 19 | 86.06 | wind | 7 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 27 | 86.36 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 29 | 86.37 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 11 |
| 30 | 86.37 | wind | 7 | 43200 | > th | dose dependent | rect. | 14 | 4 |
| 36 | 86.60 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 22 |
| 41 | 86.77 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 7 |
| 42 | 86.80 | wind | 7 | 43200 | > th | dose dependent | rect. | 12 | 7 |
| 53 | 87.00 | radiation | 1 | 1440 | < th | dose dependent | sin | 0 | NA |
| 58 | 87.10 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 11 |
| 77 | 87.38 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 93 | 87.60 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 7 |
| 117 | 87.94 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 121 | 87.97 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 124 | 87.98 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 128 | 88.00 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 5 |
| 145 | 88.07 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 146 | 88.08 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 4 |
| 153 | 88.10 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 156 | 88.10 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 22 |
| 159 | 88.11 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 161 | 88.11 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 14 |
| 164 | 88.12 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 20 |
| 178 | 88.16 | wind | 9 | 43200 | > th | dose independent | rect. | 11 | 19 |
| 181 | 88.17 | wind | 9 | 43200 | > th | dose independent | rect. | 11 | 17 |
| 190 | 88.20 | wind | 9 | 43200 | < th | dose independent | rect. | 11 | 19 |
| 196 | 88.22 | wind | 9 | 43200 | < th | dose independent | rect. | 11 | 17 |
| 210 | 88.30 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 226 | 88.35 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 20 |
| 253 | 88.40 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 255 | 88.41 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 17 |
| 261 | 88.42 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 271 | 88.43 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 303 | 88.51 | wind | 7 | 43200 | > th | dose independent | sin | 20 | NA |
| 314 | 88.55 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 11 |
| 324 | 88.60 | radiation | 1 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 328 | 88.62 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 331 | 88.63 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 335 | 88.64 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 5 |
| 344 | 88.68 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 18 |
| 347 | 88.69 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 20 |
| 379 | 88.79 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 17 |
| 380 | 88.80 | radiation | 1 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 381 | 88.80 | temperature | 25 | 1440 | > th | dose dependent | sin | 16 | NA |
| 383 | 88.80 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 15 |
| 401 | 88.84 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 10 |
| 404 | 88.85 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 11 |
| 430 | 88.91 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 17 |
| 453 | 88.97 | wind | 9 | 43200 | < th | dose independent | rect. | 14 | 7 |
| 482 | 89.04 | wind | 9 | 43200 | > th | dose independent | rect. | 14 | 7 |
| 495 | 89.09 | wind | 7 | 43200 | < th | dose independent | sin | 21 | NA |
| 519 | 89.21 | wind | 7 | 43200 | > th | dose dependent | sin | 17 | NA |
| 559 | 89.36 | wind | 9 | 43200 | < th | dose independent | sin | 17 | NA |
| 600 | 89.49 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 616 | 89.56 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 628 | 89.61 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 636 | 89.65 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 658 | 89.74 | radiation | 1 | 1440 | > th | dose independent | sin | 23 | NA |
| 723 | 89.93 | temperature | 25 | 1440 | > th | dose dependent | rect. | 24 | 22 |
| 737 | 89.96 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 741 | 89.96 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 776 | 90.01 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 796 | 90.02 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 808 | 90.04 | radiation | 1 | 1440 | < th | dose independent | sin | 23 | NA |
| 838 | 90.07 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 16 |
| 871 | 90.14 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 902 | 90.22 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 15 |
| 906 | 90.23 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |