BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0548100 Os12g0548100|AK101059
(1288 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0548100 Similar to G14587-6 protein (Fragment) 2044 0.0
>Os12g0548100 Similar to G14587-6 protein (Fragment)
Length = 1288
Score = 2044 bits (5296), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1016/1121 (90%), Positives = 1016/1121 (90%)
Query: 168 NHRNRKRKSHQQRQXXXXXXXXXXXXXXXXXXXXXXXXXXEHPDARRSLVDTAAELAAFD 227
NHRNRKRKSHQQRQ EHPDARRSLVDTAAELAAFD
Sbjct: 168 NHRNRKRKSHQQRQSPAAAPSLLPRALALLADAAGRLPLGEHPDARRSLVDTAAELAAFD 227
Query: 228 VLVAVLGSGYYAEAMPDLVRALAPVALXXXXXXXXXXXVEFLARKVVPLGVEGGEDGVRK 287
VLVAVLGSGYYAEAMPDLVRALAPVAL VEFLARKVVPLGVEGGEDGVRK
Sbjct: 228 VLVAVLGSGYYAEAMPDLVRALAPVALSGSRSAARASAVEFLARKVVPLGVEGGEDGVRK 287
Query: 288 AVGYLPRYLAAKAPEKSEARAMAVEAIVEVVRAMGQLEMEGFAGYVVAMAKGKAKGRXXX 347
AVGYLPRYLAAKAPEKSEARAMAVEAIVEVVRAMGQLEMEGFAGYVVAMAKGKAKGR
Sbjct: 288 AVGYLPRYLAAKAPEKSEARAMAVEAIVEVVRAMGQLEMEGFAGYVVAMAKGKAKGRLLA 347
Query: 348 XXXXXXXXXXXXPSEGDDCGLQEGSWGLKFVRVLVERCSDTVGGVRARALTNAAQALDVL 407
PSEGDDCGLQEGSWGLKFVRVLVERCSDTVGGVRARALTNAAQALDVL
Sbjct: 348 VDLILAMLPLLLPSEGDDCGLQEGSWGLKFVRVLVERCSDTVGGVRARALTNAAQALDVL 407
Query: 408 SERGMEVDRLQEVMRIGNIGLGELLRLRCADDKAAVRKAALVLITKSIRLIGRPVDESLL 467
SERGMEVDRLQEVMRIGNIGLGELLRLRCADDKAAVRKAALVLITKSIRLIGRPVDESLL
Sbjct: 408 SERGMEVDRLQEVMRIGNIGLGELLRLRCADDKAAVRKAALVLITKSIRLIGRPVDESLL 467
Query: 468 SAMGAACSDPLVSIRKAALAAISEVFRNFPDERVTKEWLQAVPPLVIDSETSIQEECENL 527
SAMGAACSDPLVSIRKAALAAISEVFRNFPDERVTKEWLQAVPPLVIDSETSIQEECENL
Sbjct: 468 SAMGAACSDPLVSIRKAALAAISEVFRNFPDERVTKEWLQAVPPLVIDSETSIQEECENL 527
Query: 528 FLELVLNRVCQAAXXXXXXXXXXMEEVFPKGTLDLLKSICDGEVAPCIXXXXXXXXXXXX 587
FLELVLNRVCQAA MEEVFPKGTLDLLKSICDGEVAPCI
Sbjct: 528 FLELVLNRVCQAANLNLNDDSNDMEEVFPKGTLDLLKSICDGEVAPCIKKICASLGKKKK 587
Query: 588 XXXXXXXXXQNIITISESLWLRGCKPIEMWTAPAGAWWLLSEVSSFAPKSVNWKFLSHHW 647
QNIITISESLWLRGCKPIEMWTAPAGAWWLLSEVSSFAPKSVNWKFLSHHW
Sbjct: 588 LKPLLASSLQNIITISESLWLRGCKPIEMWTAPAGAWWLLSEVSSFAPKSVNWKFLSHHW 647
Query: 648 KLLDNVGQDKGKVRPKGEPNSALWAVDRVSLLQTISNVSMELPVEPAAELAHSLLTRIEN 707
KLLDNVGQDKGKVRPKGEPNSALWAVDRVSLLQTISNVSMELPVEPAAELAHSLLTRIEN
Sbjct: 648 KLLDNVGQDKGKVRPKGEPNSALWAVDRVSLLQTISNVSMELPVEPAAELAHSLLTRIEN 707
Query: 708 FDMNLSEVDAHVKSLKTLCKRKAKTAKEGETLILKWVQQLICKAVNILDEYIKETSEAAK 767
FDMNLSEVDAHVKSLKTLCKRKAKTAKEGETLILKWVQQLICKAVNILDEYIKETSEAAK
Sbjct: 708 FDMNLSEVDAHVKSLKTLCKRKAKTAKEGETLILKWVQQLICKAVNILDEYIKETSEAAK 767
Query: 768 GPKFFTPLSGKLKGRKDASAQKSMSHAVIAVFTIGSLILACPTANVQGVIPSLHTIITSG 827
GPKFFTPLSGKLKGRKDASAQKSMSHAVIAVFTIGSLILACPTANVQGVIPSLHTIITSG
Sbjct: 768 GPKFFTPLSGKLKGRKDASAQKSMSHAVIAVFTIGSLILACPTANVQGVIPSLHTIITSG 827
Query: 828 NSQPRPKNLAGGTVSFKELAPSLYIQSWDTMAKICLVDDKLAKRYIPLFVQELERSDLAT 887
NSQPRPKNLAGGTVSFKELAPSLYIQSWDTMAKICLVDDKLAKRYIPLFVQELERSDLAT
Sbjct: 828 NSQPRPKNLAGGTVSFKELAPSLYIQSWDTMAKICLVDDKLAKRYIPLFVQELERSDLAT 887
Query: 888 LRNNIMIALADFYVRYTAMVDCYMSKITKSLRDPCEVVRRQTFILLSKLLQRDYVKWRGV 947
LRNNIMIALADFYVRYTAMVDCYMSKITKSLRDPCEVVRRQTFILLSKLLQRDYVKWRGV
Sbjct: 888 LRNNIMIALADFYVRYTAMVDCYMSKITKSLRDPCEVVRRQTFILLSKLLQRDYVKWRGV 947
Query: 948 LFLRFLPSLVDESEKIRHLADFLFGNILKAKAPLLAYNSFIEAIYVLNNCLGNGAQTESQ 1007
LFLRFLPSLVDESEKIRHLADFLFGNILKAKAPLLAYNSFIEAIYVLNNCLGNGAQTESQ
Sbjct: 948 LFLRFLPSLVDESEKIRHLADFLFGNILKAKAPLLAYNSFIEAIYVLNNCLGNGAQTESQ 1007
Query: 1008 GRLDGGPTLFAIRGTDERSRSKRMHIYVSLLKQMAPEHLLATSAKLCAEILAAACDGLLN 1067
GRLDGGPTLFAIRGTDERSRSKRMHIYVSLLKQMAPEHLLATSAKLCAEILAAACDGLLN
Sbjct: 1008 GRLDGGPTLFAIRGTDERSRSKRMHIYVSLLKQMAPEHLLATSAKLCAEILAAACDGLLN 1067
Query: 1068 VDDAAGRAVLQDALQILACKEMRIHPNICTDNSEMDEECGDGGSSNATLQAAKGRAVTQV 1127
VDDAAGRAVLQDALQILACKEMRIHPNICTDNSEMDEECGDGGSSNATLQAAKGRAVTQV
Sbjct: 1068 VDDAAGRAVLQDALQILACKEMRIHPNICTDNSEMDEECGDGGSSNATLQAAKGRAVTQV 1127
Query: 1128 AKKNLIQIAIPIFIELKRLLESKNSPLTGCLMECLRTLLKDYKNEFDEILVADKQLQKEL 1187
AKKNLIQIAIPIFIELKRLLESKNSPLTGCLMECLRTLLKDYKNEFDEILVADKQLQKEL
Sbjct: 1128 AKKNLIQIAIPIFIELKRLLESKNSPLTGCLMECLRTLLKDYKNEFDEILVADKQLQKEL 1187
Query: 1188 LYDMQKLDVXXXXXXXXXXXXXXXXXXXXXXVNGGGKRAADGSARATARSVLKEVNRNTP 1247
LYDMQKLDV VNGGGKRAADGSARATARSVLKEVNRNTP
Sbjct: 1188 LYDMQKLDVAGKGKAKAAAAAEAGPSGASPAVNGGGKRAADGSARATARSVLKEVNRNTP 1247
Query: 1248 TPPLNSMSVPKVRSMLGVGSRRPAVLESVRRLEPFGSDDEN 1288
TPPLNSMSVPKVRSMLGVGSRRPAVLESVRRLEPFGSDDEN
Sbjct: 1248 TPPLNSMSVPKVRSMLGVGSRRPAVLESVRRLEPFGSDDEN 1288
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 34,260,881
Number of extensions: 1264760
Number of successful extensions: 3460
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 3455
Number of HSP's successfully gapped: 1
Length of query: 1288
Length of database: 17,035,801
Length adjustment: 113
Effective length of query: 1175
Effective length of database: 11,135,619
Effective search space: 13084352325
Effective search space used: 13084352325
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 162 (67.0 bits)