Os12g0548100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to G14587-6 protein (Fragment).
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Os12g0548100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to G14587-6 protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 95.4 | 0.459 | 7.72 | 2.2 | 2.45 | 0.41 | 0.56 | 2.78 | 0.471 | 18.7 | 20 | 1376 | -- | -- |
| 102.87 | 0.476 | 7.81 | 1.67 | 2.38 | 0.359 | 0.323 | -- | 0.342 | 19 | 29.2 | 90 | -- | -- |
| 96.06 | 0.456 | 7.73 | 2.17 | 2.45 | 0.436 | -- | 2.71 | 0.466 | 18.7 | 20.2 | 1321 | -- | -- |
| 102.92 | 0.476 | 7.81 | 1.66 | 2.37 | 0.368 | -- | -- | 0.347 | 19 | 28.91 | 107 | -- | -- |
| 396.74 | 0.928 | 7.68 | 1.97 | -- | 0.877 | -- | 2.9 | 0.356 | -- | 20.1 | 540 | -- | -- |
| 109.21 | 0.49 | 7.8 | 1.75 | 2.46 | -- | 0.469 | -- | 0.378 | 18.7 | -- | -- | -- | -- |
| 109.77 | 0.491 | 7.8 | 1.75 | 2.46 | -- | -- | -- | 0.38 | 18.7 | -- | -- | -- | -- |
| 275.73 | 0.773 | 7.81 | 1.33 | -- | 1.72 | -- | -- | 0.0751 | -- | 27.6 | 441 | -- | -- |
| 172.04 | 0.611 | 7.86 | -- | 2.16 | 0.607 | -- | -- | 0.106 | 19.3 | 27.5 | 148 | -- | -- |
| 426.71 | 0.965 | 7.75 | 1.69 | -- | -- | -- | -- | 0.331 | -- | -- | -- | -- | -- |
| 190.12 | 0.645 | 7.84 | -- | 2.44 | -- | -- | -- | 0.185 | 18.8 | -- | -- | -- | -- |
| 319.8 | 0.833 | 7.87 | -- | -- | 1.72 | -- | -- | -0.275 | -- | 26.4 | 387 | -- | -- |
| 502.02 | 1.05 | 7.79 | -- | -- | -- | -- | -- | 0.144 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 93.48 | humidity | 90 | 720 | > th | dose dependent | rect. | 12 | 13 |
| 10 | 94.36 | temperature | 25 | 1440 | < th | dose dependent | rect. | 12 | 10 |
| 14 | 94.52 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 7 |
| 16 | 94.55 | humidity | 90 | 720 | > th | dose dependent | sin | 18 | NA |
| 17 | 94.62 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 17 |
| 20 | 94.66 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 18 |
| 23 | 94.71 | wind | 7 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 50 | 94.88 | humidity | 90 | 720 | > th | dose independent | rect. | 12 | 13 |
| 53 | 94.90 | temperature | 20 | 1440 | < th | dose independent | sin | 22 | NA |
| 57 | 94.93 | temperature | 20 | 1440 | > th | dose independent | sin | 22 | NA |
| 67 | 94.98 | temperature | 25 | 1440 | < th | dose dependent | sin | 18 | NA |
| 71 | 95.00 | temperature | 20 | 1440 | > th | dose independent | rect. | 7 | 20 |
| 84 | 95.06 | humidity | 90 | 720 | > th | dose independent | rect. | 12 | 15 |
| 92 | 95.08 | humidity | 90 | 720 | > th | dose independent | sin | 16 | NA |
| 94 | 95.08 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 102 | 95.10 | temperature | 20 | 1440 | < th | dose independent | rect. | 7 | 22 |
| 226 | 95.44 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 11 |
| 230 | 95.44 | wind | 7 | 4320 | > th | dose dependent | rect. | 7 | 3 |
| 245 | 95.49 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 11 |
| 268 | 95.53 | temperature | 20 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 274 | 95.54 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 290 | 95.56 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 23 |
| 296 | 95.59 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 299 | 95.59 | temperature | 20 | 1440 | > th | dose independent | rect. | 10 | 23 |
| 313 | 95.61 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 327 | 95.63 | temperature | 20 | 1440 | < th | dose independent | rect. | 10 | 23 |
| 384 | 95.72 | humidity | 80 | 720 | > th | dose dependent | rect. | 12 | 18 |
| 391 | 95.73 | humidity | 80 | 1440 | > th | dose dependent | rect. | 10 | 19 |
| 432 | 95.80 | humidity | 90 | 720 | > th | dose dependent | rect. | 21 | 4 |
| 555 | 96.03 | humidity | 90 | 720 | > th | dose independent | rect. | 21 | 4 |
| 587 | 96.09 | humidity | 90 | 720 | > th | dose independent | rect. | 23 | 1 |
| 602 | 96.11 | humidity | 90 | 720 | > th | dose dependent | rect. | 23 | 1 |
| 606 | 96.12 | humidity | 90 | 720 | > th | dose independent | rect. | 19 | 6 |
| 618 | 96.14 | temperature | 25 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 673 | 96.25 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 9 |
| 678 | 96.26 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 696 | 96.30 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 708 | 96.33 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 734 | 96.37 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 743 | 96.39 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 11 |
| 745 | 96.39 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 767 | 96.42 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 791 | 96.46 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 11 |
| 834 | 96.52 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 11 |
| 849 | 96.55 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 907 | 96.64 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 8 |
| 912 | 96.64 | humidity | 80 | 1440 | > th | dose dependent | rect. | 11 | 7 |
| 939 | 96.68 | wind | 7 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 961 | 96.71 | wind | 5 | 720 | > th | dose independent | rect. | 7 | 2 |
| 998 | 96.75 | wind | 9 | 4320 | > th | dose independent | rect. | 9 | 1 |