BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0538300 Os12g0538300|AK067402
         (610 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0538300  Dor1-like protein family protein                   1196   0.0  

>Os12g0538300 Dor1-like protein family protein
          Length = 610

 Score = 1196 bits (3094), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 584/610 (95%), Positives = 584/610 (95%)

Query: 1   MDVLDAGHRATPEPXXXXXXXXXXXXXXXXVLPLAGAAYQPYVSELLSFSIERLHKEPEL 60
           MDVLDAGHRATPEP                VLPLAGAAYQPYVSELLSFSIERLHKEPEL
Sbjct: 1   MDVLDAGHRATPEPSSSSSSAAAADMSGASVLPLAGAAYQPYVSELLSFSIERLHKEPEL 60

Query: 61  LRVDAERVRRQMQEVAVENYGAFIAASEALSFVRAQLEGFDRHLEALIEEIPNLTSGCTE 120
           LRVDAERVRRQMQEVAVENYGAFIAASEALSFVRAQLEGFDRHLEALIEEIPNLTSGCTE
Sbjct: 61  LRVDAERVRRQMQEVAVENYGAFIAASEALSFVRAQLEGFDRHLEALIEEIPNLTSGCTE 120

Query: 121 FVESAQQILEERKLNQTLLANHSTLLDLLEIPQLMDTCIRNGNYDEALDLEAFVSKISKL 180
           FVESAQQILEERKLNQTLLANHSTLLDLLEIPQLMDTCIRNGNYDEALDLEAFVSKISKL
Sbjct: 121 FVESAQQILEERKLNQTLLANHSTLLDLLEIPQLMDTCIRNGNYDEALDLEAFVSKISKL 180

Query: 181 HPDLPVIQGLAVEVKKTXXXXXXXXXXKLRSNIQLPECLRIVAHLRRIGVFSESELRLQF 240
           HPDLPVIQGLAVEVKKT          KLRSNIQLPECLRIVAHLRRIGVFSESELRLQF
Sbjct: 181 HPDLPVIQGLAVEVKKTIQSLISQLLQKLRSNIQLPECLRIVAHLRRIGVFSESELRLQF 240

Query: 241 LRCREAWLSGILDDLDQRNVYGYLTGMVGYHRTHLFDVVNQYRAIFNNDKSGSDENYDGG 300
           LRCREAWLSGILDDLDQRNVYGYLTGMVGYHRTHLFDVVNQYRAIFNNDKSGSDENYDGG
Sbjct: 241 LRCREAWLSGILDDLDQRNVYGYLTGMVGYHRTHLFDVVNQYRAIFNNDKSGSDENYDGG 300

Query: 301 LLFSWAMHQISNHLTTLQVMLPNITEGGSLSNIREQCMYCAMGLGLVGLDFRGLLPPIFE 360
           LLFSWAMHQISNHLTTLQVMLPNITEGGSLSNIREQCMYCAMGLGLVGLDFRGLLPPIFE
Sbjct: 301 LLFSWAMHQISNHLTTLQVMLPNITEGGSLSNIREQCMYCAMGLGLVGLDFRGLLPPIFE 360

Query: 361 KAVLNLFSKNMGTAVENFQVVLDSHRWVPMPSVGFVANGVVDETSDDVTPPSVLMEHPPL 420
           KAVLNLFSKNMGTAVENFQVVLDSHRWVPMPSVGFVANGVVDETSDDVTPPSVLMEHPPL
Sbjct: 361 KAVLNLFSKNMGTAVENFQVVLDSHRWVPMPSVGFVANGVVDETSDDVTPPSVLMEHPPL 420

Query: 421 AVFVNGVSAAMNELRPCAPLSLKNVLAEEVVKGLQAVSDSLVRYNAMRMLRGNESSLFLS 480
           AVFVNGVSAAMNELRPCAPLSLKNVLAEEVVKGLQAVSDSLVRYNAMRMLRGNESSLFLS
Sbjct: 421 AVFVNGVSAAMNELRPCAPLSLKNVLAEEVVKGLQAVSDSLVRYNAMRMLRGNESSLFLS 480

Query: 481 LCQAFIEVAYPYCSACFGRCYPNGAILITERRSTFDAVSQLLTVPARSNSSGISIERRQS 540
           LCQAFIEVAYPYCSACFGRCYPNGAILITERRSTFDAVSQLLTVPARSNSSGISIERRQS
Sbjct: 481 LCQAFIEVAYPYCSACFGRCYPNGAILITERRSTFDAVSQLLTVPARSNSSGISIERRQS 540

Query: 541 GSIERKQSGAIERKQSEGIERKQSIDESAGTTATDNGTPANGPPPVANDDSGTSSAPAQP 600
           GSIERKQSGAIERKQSEGIERKQSIDESAGTTATDNGTPANGPPPVANDDSGTSSAPAQP
Sbjct: 541 GSIERKQSGAIERKQSEGIERKQSIDESAGTTATDNGTPANGPPPVANDDSGTSSAPAQP 600

Query: 601 DGQTTAAAST 610
           DGQTTAAAST
Sbjct: 601 DGQTTAAAST 610



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 20,085,088
Number of extensions: 829887
Number of successful extensions: 2976
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2971
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 503
Effective length of database: 11,448,903
Effective search space: 5758798209
Effective search space used: 5758798209
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)