BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0524600 Os12g0524600|Os12g0524600
         (380 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0524600                                                      723   0.0  

>Os12g0524600 
          Length = 380

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/380 (92%), Positives = 353/380 (92%)

Query: 1   MGIVSQPPRPPKRKELVFGFELFPVYNSKSICLSWXXXXXXXXXXXXXCQCCPKTRSRSK 60
           MGIVSQPPRPPKRKELVFGFELFPVYNSKSICLSW             CQCCPKTRSRSK
Sbjct: 1   MGIVSQPPRPPKRKELVFGFELFPVYNSKSICLSWKRFRVPRRSSKRRCQCCPKTRSRSK 60

Query: 61  LKIESSGVWIPMFVPTQMIDELDLEYAHFATQQGISFPMRLLLPFERGRPLLQLXXXXXX 120
           LKIESSGVWIPMFVPTQMIDELDLEYAHFATQQGISFPMRLLLPFERGRPLLQL      
Sbjct: 61  LKIESSGVWIPMFVPTQMIDELDLEYAHFATQQGISFPMRLLLPFERGRPLLQLSSDDSS 120

Query: 121 XXXXXXXXQPKKRKEKANESEYNQSIAFDDSLTASSTQASISCSRHRRLPAPVHERWMKG 180
                   QPKKRKEKANESEYNQSIAFDDSLTASSTQASISCSRHRRLPAPVHERWMKG
Sbjct: 121 PAVDSDLSQPKKRKEKANESEYNQSIAFDDSLTASSTQASISCSRHRRLPAPVHERWMKG 180

Query: 181 KEGDRMRDGVPAEWNGHPWGQLCKTEFTIKLDGKTTTKITRNPAQSEWRENPCALEGSEA 240
           KEGDRMRDGVPAEWNGHPWGQLCKTEFTIKLDGKTTTKITRNPAQSEWRENPCALEGSEA
Sbjct: 181 KEGDRMRDGVPAEWNGHPWGQLCKTEFTIKLDGKTTTKITRNPAQSEWRENPCALEGSEA 240

Query: 241 VRTLIDKTRNDKNKPSYELLVDLEIAETLENPEDWFNAEEIPTFTDSSIQEGKACLFVQP 300
           VRTLIDKTRNDKNKPSYELLVDLEIAETLENPEDWFNAEEIPTFTDSSIQEGKACLFVQP
Sbjct: 241 VRTLIDKTRNDKNKPSYELLVDLEIAETLENPEDWFNAEEIPTFTDSSIQEGKACLFVQP 300

Query: 301 MPSAWKEAKLLQQLKGVKTDRREYEGEVHTLPMRSGRFPEEEAKRTGVEKEMKFVPVHAV 360
           MPSAWKEAKLLQQLKGVKTDRREYEGEVHTLPMRSGRFPEEEAKRTGVEKEMKFVPVHAV
Sbjct: 301 MPSAWKEAKLLQQLKGVKTDRREYEGEVHTLPMRSGRFPEEEAKRTGVEKEMKFVPVHAV 360

Query: 361 AELRIKSLRKANPWGIEIPV 380
           AELRIKSLRKANPWGIEIPV
Sbjct: 361 AELRIKSLRKANPWGIEIPV 380



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.133    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,989,517
Number of extensions: 528982
Number of successful extensions: 1347
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1347
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 277
Effective length of database: 11,657,759
Effective search space: 3229199243
Effective search space used: 3229199243
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)