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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0524600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.21 (0.023) R2 : 0.0104
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.106 (0.0485) R2dN8 : 0.0135 R2N8 : 0.0104
σ : 0.434
deviance : 86.33
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_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
82.82 0.428 3.2 0.0134 0.137 0.615 -0.0298 -0.183 0.13 8.53 19.52 11 -- --
82.81 0.427 3.2 0.0127 0.138 0.691 -0.0258 -- 0.13 8.58 19.47 12 -- --
82.81 0.427 3.2 0.0129 0.138 0.629 -- -0.156 0.13 8.57 19.5 12 -- --
82.81 0.427 3.2 0.0117 0.138 0.692 -- -- 0.13 8.6 19.46 12 -- --
83.86 0.429 3.21 0.00823 -- 0.594 -- -0.186 0.129 -- 19.4 12 -- --
85.27 0.433 3.21 -0.0854 0.127 -- 0.00966 -- 0.0953 7.74 -- -- -- --
85.27 0.432 3.21 -0.0852 0.127 -- -- -- 0.0953 7.72 -- -- -- --
83.86 0.428 3.21 0.00667 -- 0.675 -- -- 0.128 -- 19.3 11 -- --
82.82 0.426 3.2 -- 0.138 0.684 -- -- 0.128 8.58 19.46 12 -- --
86.15 0.434 3.21 -0.0836 -- -- -- -- 0.0971 -- -- -- -- --
85.47 0.432 3.21 -- 0.127 -- -- -- 0.105 7.77 -- -- -- --
83.86 0.428 3.21 -- -- 0.671 -- -- 0.127 -- 19.3 11 -- --
86.33 0.434 3.21 -- -- -- -- -- 0.106 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 79.55 humidity 50 1440 > th dose independent rect. 16 11
4 79.58 humidity 60 1440 < th dose independent rect. 18 1
19 79.59 humidity 60 1440 < th dose dependent rect. 18 1
35 79.62 humidity 50 1440 > th dose independent rect. 17 7
37 79.63 humidity 50 1440 > th dose independent rect. 17 2
42 79.63 humidity 50 1440 > th dose independent rect. 16 17
51 79.65 temperature 25 90 > th dose dependent rect. 2 2
56 79.66 humidity 50 1440 < th dose independent rect. 17 17
140 79.73 temperature 25 270 > th dose independent rect. 1 1
161 79.74 temperature 25 90 > th dose independent rect. 1 3
193 79.78 temperature 25 90 > th dose dependent rect. 1 4
214 79.81 atmosphere 1005 10 > th dose dependent rect. 1 4
324 80.11 humidity 90 1440 > th dose dependent rect. 6 1
368 80.21 humidity 50 4320 < th dose dependent rect. 14 1
427 80.46 wind 1 43200 < th dose independent rect. 17 2
443 80.46 wind 3 10 < th dose dependent rect. 22 5
444 80.47 radiation 1 4320 > th dose independent rect. 6 2
446 80.50 radiation 1 4320 < th dose independent rect. 6 2
483 80.56 wind 1 43200 > th dose independent rect. 17 2
489 80.61 atmosphere 1005 270 > th dose dependent rect. 1 1
490 80.61 radiation 1 43200 < th dose dependent rect. 3 1
509 80.66 wind 1 10 < th dose dependent rect. 2 1
515 80.69 atmosphere 1015 14400 > th dose independent rect. 14 4
517 80.69 atmosphere 1015 14400 > th dose dependent rect. 13 7
563 80.79 atmosphere 1015 14400 > th dose dependent rect. 18 3
571 80.82 atmosphere 1015 14400 < th dose independent rect. 15 5
597 80.85 radiation 1 4320 < th dose dependent rect. 6 1
657 80.92 wind 1 43200 < th dose dependent rect. 17 2
658 80.93 radiation 40 1440 < th dose independent rect. 7 1
664 80.93 radiation 1 4320 < th dose independent rect. 3 5
678 80.93 temperature 10 30 > th dose dependent rect. 3 22
679 80.94 wind 1 30 < th dose independent rect. 24 3
703 80.97 wind 1 10 < th dose independent rect. 14 13
710 80.99 humidity 60 720 > th dose independent rect. 13 2
718 81.00 wind 1 10 < th dose independent rect. 17 10
725 81.02 wind 1 10 < th dose independent rect. 21 6
731 81.03 wind 9 10 < th dose independent rect. 3 23
736 81.06 wind 1 4320 > th dose independent rect. 15 1
763 81.11 humidity 60 720 < th dose independent sin 12 NA
784 81.12 wind 7 10 > th dose dependent rect. 12 1
788 81.13 atmosphere 995 10 > th dose independent rect. 3 23
808 81.17 wind 9 14400 < th dose independent rect. 6 4
838 81.21 atmosphere 1010 10 < th dose dependent rect. 2 1
850 81.23 temperature 15 90 > th dose independent rect. 3 22
865 81.25 wind 1 4320 < th dose independent rect. 15 1
942 81.28 radiation 30 720 > th dose dependent rect. 15 17
943 81.29 humidity 90 270 < th dose independent rect. 1 1
957 81.33 wind 3 270 < th dose independent rect. 15 12
958 81.33 wind 3 10 < th dose dependent rect. 14 13
960 81.34 radiation 40 1440 < th dose independent rect. 4 4
963 81.34 temperature 10 30 > th dose dependent rect. 5 20
969 81.36 humidity 50 720 < th dose independent rect. 12 1
972 81.36 wind 1 4320 < th dose dependent rect. 15 1
993 81.37 humidity 60 720 > th dose independent sin 12 NA
994 81.37 humidity 90 43200 < th dose independent rect. 6 1
995 81.37 atmosphere 1005 10 > th dose independent rect. 2 1
996 81.38 humidity 50 4320 < th dose independent rect. 14 1