BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0509600 Os12g0509600|Os12g0509600
         (371 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0509600  Conserved hypothetical protein                      691   0.0  
Os10g0462300  ATPase, F1 complex, delta/epsilon subunit fami...   116   3e-26
Os10g0459800                                                       71   1e-12

>Os12g0509600 Conserved hypothetical protein
          Length = 371

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/371 (92%), Positives = 343/371 (92%)

Query: 1   MAGADESTGEIWTVVVGCTSADIRMHNLRLHRLRVDATSGRVLGRPGDLLRRLMRVAPAD 60
           MAGADESTGEIWTVVVGCTSADIRMHNLRLHRLRVDATSGRVLGRPGDLLRRLMRVAPAD
Sbjct: 1   MAGADESTGEIWTVVVGCTSADIRMHNLRLHRLRVDATSGRVLGRPGDLLRRLMRVAPAD 60

Query: 61  DEAEVFPDARAALITRDDDQRRLYLFCDRWLLSPGSGWGDSGQVATPISKPTVAMALDLS 120
           DEAEVFPDARAALITRDDDQRRLYLFCDRWLLSPGSGWGDSGQVATPISKPTVAMALDLS
Sbjct: 61  DEAEVFPDARAALITRDDDQRRLYLFCDRWLLSPGSGWGDSGQVATPISKPTVAMALDLS 120

Query: 121 DRTLPTIFAMDLPSSSCVLAWPVPAAAKIWAPYVAPIPGGRGRSRRLTMLHLDETSDDQY 180
           DRTLPTIFAMDLPSSSCVLAWPVPAAAKIWAPYVAPIPGGRGRSRRLTMLHLDETSDDQY
Sbjct: 121 DRTLPTIFAMDLPSSSCVLAWPVPAAAKIWAPYVAPIPGGRGRSRRLTMLHLDETSDDQY 180

Query: 181 CWIDAGSIDLPQEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTPLLQGFAVLGDVILVS 240
           CWIDAGSIDLPQED                            KTPLLQGFAVLGDVILVS
Sbjct: 181 CWIDAGSIDLPQEDSSSSSTISMSASGTGYYSSIYGGYAMSGKTPLLQGFAVLGDVILVS 240

Query: 241 LRTCDFYLFRCSTCHWSRVYLVGDCCHYIPLNGRAVFSEEDDHIYFFRDSCLYAYKFSLE 300
           LRTCDFYLFRCSTCHWSRVYLVGDCCHYIPLNGRAVFSEEDDHIYFFRDSCLYAYKFSLE
Sbjct: 241 LRTCDFYLFRCSTCHWSRVYLVGDCCHYIPLNGRAVFSEEDDHIYFFRDSCLYAYKFSLE 300

Query: 301 EGKMAPPIKLASLYDDFSAHGNAFIAGLSNRVLEFGEDDLWLEEDTNDAVDSSSQVSLPC 360
           EGKMAPPIKLASLYDDFSAHGNAFIAGLSNRVLEFGEDDLWLEEDTNDAVDSSSQVSLPC
Sbjct: 301 EGKMAPPIKLASLYDDFSAHGNAFIAGLSNRVLEFGEDDLWLEEDTNDAVDSSSQVSLPC 360

Query: 361 CRTFPKGSLEK 371
           CRTFPKGSLEK
Sbjct: 361 CRTFPKGSLEK 371



>Os10g0462300 ATPase, F1 complex, delta/epsilon subunit family protein
          Length = 695

 Score =  116 bits (290), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 105/340 (30%), Positives = 153/340 (45%), Gaps = 44/340 (12%)

Query: 2   AGADESTGEIWTVVVGCTSADIRMHNLRLHRLRVDATSGRVLGRPGDLLRRLMRVAPADD 61
           AGAD+     W+VVVG T+ D+  HNLRLHR RV A SGR+L    D+L     VAP D 
Sbjct: 15  AGADDRPR--WSVVVGLTAVDVPRHNLRLHRFRV-AASGRILSGSDDVLETFRHVAPDDV 71

Query: 62  EAEVFPDARAALITRDDDQRRLYLFCDRWLLSPGSGWGDSGQVATPISKPTVAMALDLSD 121
            AE F  A A L   +D   +++L C    L+    W  +    T ++K   + ++DL  
Sbjct: 72  AAEAFSTASAYL--SNDGGHQMHLICRAVPLNADGRWTCN---KTNLNKCYRSFSMDLGG 126

Query: 122 RTLPTIFA--MDLPSSSCVLA----WPVPAAAKIWAPYVA-PIPGGRGRSRRLTMLHLDE 174
                      DLP+   VL     + + A  + W   V  P P    RS    ++   E
Sbjct: 127 GGGGGAVTPLGDLPT---VLVPGGHFAIQAGGENWVLSVERPYPWLDERSTTRLLMRRQE 183

Query: 175 TSDDQYCWIDAGSIDLPQEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTPLLQGFAVLG 234
                  W+ AG    P E                                + QG AV+G
Sbjct: 184 GQR----WVLAGE---PHE-----------------FLHTGFERSESLYGSIFQGRAVIG 219

Query: 235 -DVILVSLRTCDFYLFRCSTCHWSRVYLVGDCCHYIPLNGRAVFSEEDDHIYFFRDSCLY 293
            D ILVSL    F++F C+ C W+ + L     +YIPL+ R+V+ E+ + +YF R   L+
Sbjct: 220 NDKILVSLADAAFFVFDCTHCVWTPLSLTHKKLNYIPLSNRSVYVEDHNAVYFLRFDTLF 279

Query: 294 AYKFSLEEGKMAPPIKLASLYDDFSAHGNAFIAGLSNRVL 333
           AYKFS  +  + PPI+L  +   F  +G   +  L+ +V+
Sbjct: 280 AYKFSPGKNTIEPPIRL-DVMCPFGTNGYGSLVHLAGQVM 318



>Os10g0459800 
          Length = 438

 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 47/75 (62%)

Query: 259 VYLVGDCCHYIPLNGRAVFSEEDDHIYFFRDSCLYAYKFSLEEGKMAPPIKLASLYDDFS 318
           V + GD  HYI   GRAV+ EEDD IYF R   L AYKF  EE ++ PP+K+      + 
Sbjct: 260 VTITGDSSHYILFYGRAVYVEEDDTIYFSRGCSLVAYKFLREEMQLKPPVKIGEKLFPYG 319

Query: 319 AHGNAFIAGLSNRVL 333
             G++F+A L++R+L
Sbjct: 320 DDGSSFVARLNDRIL 334



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.139    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,492,435
Number of extensions: 598317
Number of successful extensions: 1322
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1320
Number of HSP's successfully gapped: 4
Length of query: 371
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 269
Effective length of database: 11,709,973
Effective search space: 3149982737
Effective search space used: 3149982737
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)