BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0507400 Os12g0507400|Os12g0507400
         (328 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0507400  Conserved hypothetical protein                      286   1e-77

>Os12g0507400 Conserved hypothetical protein
          Length = 328

 Score =  286 bits (733), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 176/328 (53%), Positives = 176/328 (53%)

Query: 1   MGSATRIVRMALXXXXXXXXXXXXXXXXXXXXXXXXXLVSRSXXXXXXXXXXXXXXXXXX 60
           MGSATRIVRMAL                         LVSRS                  
Sbjct: 1   MGSATRIVRMALHAFFSHYHPAASAAALLALPFSAAALVSRSPALLQLAAPPRAILLLQP 60

Query: 61  XXSRRLRRVFVAAGFPPASQLLFLLNHRLSQSIVSFLATLPLAMSFLLLXXXXXXXXXXX 120
             SRRLRRVFVAAGFPPASQLLFLLNHRLSQSIVSFLATLPLAMSFLLL           
Sbjct: 61  ALSRRLRRVFVAAGFPPASQLLFLLNHRLSQSIVSFLATLPLAMSFLLLAKAYAVHAVVA 120

Query: 121 XXXXXXXXXXXXXXPSMASLVRASYPAMARTQLASFGXXXXXXXXXXXXXXXXXXXXXXX 180
                         PSMASLVRASYPAMARTQLASFG                       
Sbjct: 121 ARGRGARRCVGGAAPSMASLVRASYPAMARTQLASFGALLSAHAAVFAALLAAFNAAEAL 180

Query: 181 XXGSDGRAVLALSAAGVIVYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
             GSDGRAVLALSAAGVIVYS                                       
Sbjct: 181 RLGSDGRAVLALSAAGVIVYSVALANAAAVCNLATVVAAAEGGRGGARAVLRAVLLVRGD 240

Query: 241 XXXXXXXXXXXXXXXXXXEGLFQLRIARPYAVTGELTSSMVCEGFLIAYIYSIICVLDTV 300
                             EGLFQLRIARPYAVTGELTSSMVCEGFLIAYIYSIICVLDTV
Sbjct: 241 AATAVAVALPATLATAAVEGLFQLRIARPYAVTGELTSSMVCEGFLIAYIYSIICVLDTV 300

Query: 301 ITCMVYQTCKMSHSCDLLELEEKGDLAA 328
           ITCMVYQTCKMSHSCDLLELEEKGDLAA
Sbjct: 301 ITCMVYQTCKMSHSCDLLELEEKGDLAA 328



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.328    0.136    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,454,877
Number of extensions: 94240
Number of successful extensions: 211
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 2
Length of query: 328
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 227
Effective length of database: 11,762,187
Effective search space: 2670016449
Effective search space used: 2670016449
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 156 (64.7 bits)