BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0498900 Os12g0498900|AK073621
         (215 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0498900  Hypothetical protein                                234   3e-62

>Os12g0498900 Hypothetical protein
          Length = 215

 Score =  234 bits (598), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 129/215 (60%), Positives = 129/215 (60%)

Query: 1   MLPSSQMAIQLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVISTGLSL 60
           MLPSSQMAIQLT                                      VLVISTGLSL
Sbjct: 1   MLPSSQMAIQLTLLLISCSLYSMYSSSSSSSSASSSSSSFSTSSSYLALLVLVISTGLSL 60

Query: 61  LFTNLRQMIRARSHRGKPHPSMEDQAVHQEEESIIVPQDEVADDAPEDLTGXXXXXXXXX 120
           LFTNLRQMIRARSHRGKPHPSMEDQAVHQEEESIIVPQDEVADDAPEDLTG         
Sbjct: 61  LFTNLRQMIRARSHRGKPHPSMEDQAVHQEEESIIVPQDEVADDAPEDLTGSLSESSDSP 120

Query: 121 XXXXCTXXXXXXXXXXXXXXXXXXXXXXVDGHYLGQEKKKCAWKEQXXXXXXXXXXXXXK 180
               CT                      VDGHYLGQEKKKCAWKEQ             K
Sbjct: 121 VSEECTEEGSVSDDGDDDDDESLIEISLVDGHYLGQEKKKCAWKEQDLLSEFLPDLLLDK 180

Query: 181 RDFMDILSEIGEEDNLIEIDIARGSIKCSSFGIKA 215
           RDFMDILSEIGEEDNLIEIDIARGSIKCSSFGIKA
Sbjct: 181 RDFMDILSEIGEEDNLIEIDIARGSIKCSSFGIKA 215



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,265,352
Number of extensions: 110850
Number of successful extensions: 276
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 274
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 118
Effective length of database: 11,971,043
Effective search space: 1412583074
Effective search space used: 1412583074
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)