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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0498900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 44.4 (--) R2 : 0.154
β1 : 492 (--) R2dD : 49300 R2D : -55200
β2 : -- (--) R2dC : -- R2C : --
β3 : 19100 (--) R2dE : 2710000 R2E : -2720000
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 227000 (--) R2dD*E : 2750000 R2D*E : -2750000
γ1 : 0.0289 (--) R2dN8 : 0.000647 R2N8 : -5890
σ : 0.497
deviance : 113.65
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_____
C
peak time of C : --
E
wheather : wind
threshold : 1.141
memory length : 86
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 16.1
open length of G : 1.13

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
112.83 0.495 44.4 492 0.113 19100 0.0527 227000 0.0297 11.1 1.032 90 16.1 1.1
360638914.54 884 -35.3 482 21.6 19100 128 -- 75.1 4.58 1.921 68 16.7 0.346
112.85 0.495 44.4 492 0.113 19100 -- 227000 0.0299 11.1 1.045 90 16.1 1.11
357907634.64 881 -23.2 484 141 19100 -- -- 93.4 6.28 1.992 66 16.6 0.317
113.65 0.497 44.4 492 -- 19100 -- 227000 0.0289 -- 1.141 86 16.1 1.13
133.23 0.541 2.94 -0.103 0.11 -- 0.0586 -- 0.0158 12.6 -- -- -- --
133.25 0.541 2.94 -0.101 0.11 -- -- -- 0.0161 12.7 -- -- -- --
359474624.23 883 -20.1 485 -- 19100 -- -- 109 -- 1.9 67 16.7 0.321
360664821.88 885 -22.4 -- 189 19100 -- -- 93.6 6.13 2.043 67 16.6 0.305
134 0.541 2.95 -0.105 -- -- -- -- 0.0142 -- -- -- -- --
133.52 0.541 2.94 -- 0.112 -- -- -- 0.0274 12.7 -- -- -- --
362088485.41 886 -20.3 -- -- 19100 -- -- 113 -- 2.096 109 16.8 0.055
134.29 0.541 2.94 -- -- -- -- -- 0.0258 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 113.64 wind 1.0 90 < th dose independent rect. 16 1
2 113.64 wind 1.0 90 < th dose dependent rect. 16 1
12 122.93 atmosphere 995.0 4320 < th dose dependent rect. 14 1
31 123.09 atmosphere 995.0 4320 < th dose independent rect. 14 1
40 123.21 atmosphere 995.0 4320 > th dose independent rect. 11 3
51 123.39 atmosphere 995.0 4320 > th dose independent rect. 9 5
69 123.63 radiation 1.0 4320 < th dose dependent rect. 23 1
71 123.68 wind 1.0 10 < th dose independent rect. 6 4
73 123.71 atmosphere 995.0 4320 > th dose independent rect. 4 10
74 123.72 atmosphere 995.0 4320 > th dose independent rect. 15 1
78 123.84 humidity 90.0 270 > th dose independent rect. 15 1
80 123.84 humidity 90.0 270 > th dose dependent rect. 14 1
85 123.85 precipitation 0.1 270 > th dose independent rect. 14 2
86 123.85 precipitation 0.1 270 > th dose dependent rect. 14 2
95 123.99 atmosphere 995.0 4320 > th dose independent rect. 10 7
164 124.45 atmosphere 995.0 4320 > th dose independent rect. 12 5
166 124.47 humidity 60.0 1440 > th dose independent rect. 22 11
168 124.50 humidity 60.0 90 < th dose independent rect. 18 15
169 124.50 humidity 60.0 90 < th dose dependent rect. 18 15
185 124.61 wind 1.0 10 < th dose dependent rect. 9 1
188 124.62 humidity 60.0 270 < th dose independent rect. 8 1
229 124.62 humidity 60.0 270 < th dose dependent rect. 8 1
258 124.63 humidity 60.0 30 < th dose independent rect. 9 1
303 124.63 humidity 60.0 10 < th dose dependent rect. 9 1
412 124.65 humidity 60.0 1440 > th dose independent rect. 8 1
461 124.73 wind 1.0 10 < th dose independent rect. 9 1
495 124.82 humidity 60.0 1440 > th dose independent rect. 5 4
512 124.84 humidity 90.0 270 > th dose dependent rect. 12 4
521 124.93 radiation 40.0 30 > th dose dependent rect. 9 1
551 124.96 precipitation 0.1 4320 > th dose dependent rect. 20 1
553 124.97 humidity 60.0 1440 > th dose independent rect. 20 13
580 125.05 humidity 60.0 1440 > th dose independent rect. 1 8
596 125.12 humidity 60.0 1440 > th dose independent rect. 3 6
658 125.17 humidity 90.0 270 > th dose independent rect. 12 4
801 125.64 wind 1.0 270 < th dose dependent rect. 14 1
830 125.88 wind 1.0 10 < th dose independent sin 22 NA
841 126.03 wind 1.0 10 < th dose dependent sin 22 NA
870 126.16 wind 1.0 10 > th dose independent sin 22 NA
900 126.32 atmosphere 995.0 4320 > th dose independent rect. 19 19
901 126.33 wind 9.0 1440 < th dose independent rect. 21 1
903 126.33 radiation 1.0 4320 < th dose dependent rect. 22 4
909 126.38 radiation 1.0 4320 < th dose dependent rect. 22 6
920 126.45 radiation 30.0 4320 < th dose dependent rect. 21 1
925 126.47 radiation 40.0 43200 < th dose dependent rect. 21 1
961 126.51 temperature 10.0 1440 > th dose independent rect. 21 1
964 126.51 temperature 30.0 1440 < th dose independent rect. 21 1
968 126.51 humidity 50.0 1440 > th dose independent rect. 21 1
974 126.51 atmosphere 995.0 1440 > th dose independent rect. 21 1
975 126.51 radiation 1.0 1440 < th dose independent rect. 21 1
995 126.51 temperature 10.0 1440 > th dose independent rect. 22 23