BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0464200 Os12g0464200|AK109841
(463 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0464200 Cyclin-like F-box domain containing protein 834 0.0
Os12g0463700 365 e-101
Os12g0463500 288 4e-78
Os12g0461400 246 4e-65
>Os12g0464200 Cyclin-like F-box domain containing protein
Length = 463
Score = 834 bits (2155), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/463 (91%), Positives = 425/463 (91%)
Query: 1 MEEXXXXXXXXXXXXDMVVEIAERSDPITXXXXXXXXXXXXXVICGAAGFSRNLRLRNAD 60
MEE DMVVEIAERSDPIT VICGAAGFSRNLRLRNAD
Sbjct: 1 MEEPPSSLSSPALPLDMVVEIAERSDPITLLRCAAACRHLRRVICGAAGFSRNLRLRNAD 60
Query: 61 GFVPGLLRGFFLQPRRPSPDPDYQPLRFVXXXXXXXXXXXXXDQIRSFVSSSDHVYGSIH 120
GFVPGLLRGFFLQPRRPSPDPDYQPLRFV DQIRSFVSSSDHVYGSIH
Sbjct: 61 GFVPGLLRGFFLQPRRPSPDPDYQPLRFVAAGHAIVGGGGGADQIRSFVSSSDHVYGSIH 120
Query: 121 WRIEPVAARGGFVVLRTGDSSGKVCNPMTGYVRCIDMPRPWSSGSYLLLTGDDAGVTSEL 180
WRIEPVAARGGFVVLRTGDSSGKVCNPMTGYVRCIDMPRPWSSGSYLLLTGDDAGVTSEL
Sbjct: 121 WRIEPVAARGGFVVLRTGDSSGKVCNPMTGYVRCIDMPRPWSSGSYLLLTGDDAGVTSEL 180
Query: 181 HPYRLLSVSLHLTGTGRERRRIHVEMEALSPDAGSWGPTTAIPVEIAGGGEYGSPRALLI 240
HPYRLLSVSLHLTGTGRERRRIHVEMEALSPDAGSWGPTTAIPVEIAGGGEYGSPRALLI
Sbjct: 181 HPYRLLSVSLHLTGTGRERRRIHVEMEALSPDAGSWGPTTAIPVEIAGGGEYGSPRALLI 240
Query: 241 RTPAVVDGVAYFLGGHPSLVFDLQYQRRQLPYDYFILCVDVSGETEIGSATSPATITRLP 300
RTPAVVDGVAYFLGGHPSLVFDLQYQRRQLPYDYFILCVDVSGETEIGSATSPATITRLP
Sbjct: 241 RTPAVVDGVAYFLGGHPSLVFDLQYQRRQLPYDYFILCVDVSGETEIGSATSPATITRLP 300
Query: 301 TELRLLSSCTGEADVSPGQLLLVPPSSCGGGDRKSLALLVGRRTQVEIWAMNFGGGCGAS 360
TELRLLSSCTGEADVSPGQLLLVPPSSCGGGDRKSLALLVGRRTQVEIWAMNFGGGCGAS
Sbjct: 301 TELRLLSSCTGEADVSPGQLLLVPPSSCGGGDRKSLALLVGRRTQVEIWAMNFGGGCGAS 360
Query: 361 ARSAPRLLSVSCTRVVDLTTTGVHRSPCSPPLPVPESDEVFVWSGEASGAVVLRLRGTLC 420
ARSAPRLLSVSCTRVVDLTTTGVHRSPCSPPLPVPESDEVFVWSGEASGAVVLRLRGTLC
Sbjct: 361 ARSAPRLLSVSCTRVVDLTTTGVHRSPCSPPLPVPESDEVFVWSGEASGAVVLRLRGTLC 420
Query: 421 LLDRRTMAVRALGEDFSEFRDGPNGVFLPYEIGVSSWVPSISP 463
LLDRRTMAVRALGEDFSEFRDGPNGVFLPYEIGVSSWVPSISP
Sbjct: 421 LLDRRTMAVRALGEDFSEFRDGPNGVFLPYEIGVSSWVPSISP 463
>Os12g0463700
Length = 474
Score = 365 bits (937), Expect = e-101, Method: Compositional matrix adjust.
Identities = 262/500 (52%), Positives = 292/500 (58%), Gaps = 63/500 (12%)
Query: 1 MEEXXXXXXXXXXXXDMVVEIAERSDPITXXXXXXXXXXXXXVICGAAGFSRNLRLRNAD 60
MEE D+VVEIAERSDPIT VI G GF R+LRLRNAD
Sbjct: 1 MEEPPSSSSSPALPLDIVVEIAERSDPITLLRCAAACKHLRRVISGE-GFRRDLRLRNAD 59
Query: 61 GFVPGLLRGFFLQPRRPSPDP---DYQPLRFVXXXXXXXXXXXXXDQIRSFVSSSDHVYG 117
GFVPGLL GFF QPR PSP +Y+PLRFV QI SFVS SD
Sbjct: 60 GFVPGLLHGFFFQPRCPSPHDHGYNYEPLRFVAAGRHDHIASGDNCQIPSFVSDSDE--N 117
Query: 118 SIHWRIEPVAARGGFVVLRTGDSSGKVCNPMTGYVRCIDMPRPWSSG---SYLLLTGDDA 174
+ RIEPVAARGGFVVLRTG+ SGKVCNPMTGYVR IDMPR S G SYL+LT DD
Sbjct: 118 NPCRRIEPVAARGGFVVLRTGEFSGKVCNPMTGYVRAIDMPRKTSKGEGSSYLVLTADDG 177
Query: 175 GVT---------SELHPYRLLSVSLHLTGTGRERRRIHVEMEALSPDAGSWGPTTAIPVE 225
G SELHP+RLL+V L R VEM+AL+ D G+WGP T + V
Sbjct: 178 GDGVDVGVTSDDSELHPFRLLAVRLFA--------RTRVEMQALTTDTGTWGPATTLAVV 229
Query: 226 IAGGGEYGSPRALLIRTPAVVDGVAYFLG---GHPSLVFDLQ-----------YQRRQLP 271
G A GVAYFLG G + LQ YQ P
Sbjct: 230 NTGCLGPRPVLVRPPVVVA---GVAYFLGEMSGRDDRTYQLQRRMSRVSFDPPYQHSPPP 286
Query: 272 -YDYFILCVDVS---GETEIGSATSPATITRLPTELRLLSSCTGEADVSPGQLLLVPPSS 327
Y YF+L VDVS + E G T+ ATI LPT SCTGEA V+PGQLLL PSS
Sbjct: 287 SYTYFVLAVDVSIRRRDGETGGTTAAATIMPLPTTELRAPSCTGEATVTPGQLLLA-PSS 345
Query: 328 CGGGDRK--SLALLVGRRTQVEIWAMNFGGGCGASARSAPRLLSVSCTRVVDLTTTGVHR 385
GGDR+ SLALLVGR TQVEIW M C A LL ++CT+VVDL GV R
Sbjct: 346 WRGGDRRSSSLALLVGRSTQVEIWTMKL--TCHGMA-----LLRMACTKVVDL--MGVPR 396
Query: 386 SPCSPPLPVPESDEVFVWSGEASGAVVLRLRGTLCLLD--RRTMAVRALGEDFSEFRDGP 443
SPCSP PV ES+ +WSG+ASGAVVLRL GT+CLLD RR + VRALGE+F EFR G
Sbjct: 397 SPCSP--PVSESEVALLWSGDASGAVVLRLGGTVCLLDRRRRAIVVRALGEEFVEFRSGR 454
Query: 444 NGVFLPYEIGVSSWVPSISP 463
V LPYE+G+SSWVPSISP
Sbjct: 455 RHVLLPYEVGLSSWVPSISP 474
>Os12g0463500
Length = 459
Score = 288 bits (738), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 211/466 (45%), Positives = 251/466 (53%), Gaps = 55/466 (11%)
Query: 16 DMVVEIAERSDPITXXXXXXXXXXXXXVICGAAGFSRNLRLRNADGFVPGLLRGFFLQPR 75
D++VEIAERSDPIT I G G R LRLRNA GFVP LLRGF+ QP
Sbjct: 27 DVIVEIAERSDPITLLRCAAACRQLRRAISGE-GLRRELRLRNAAGFVPVLLRGFYYQPL 85
Query: 76 RPSPDPDYQPLRFVXXXXXXXXXXXXXDQIRSFVSSSDHVYGSIHWRIEPVAARGGFVVL 135
+ +P+RF + + D S+ EPV ARGGFVV
Sbjct: 86 HGAHGFLQEPVRFFAAGAGAGDHHGQ-------LPAGDDAVESLALGFEPVEARGGFVVA 138
Query: 136 RTGDSSGKVCNPMTGYVRCIDMPRPWSSGSYLLLTGDD-------AGVTSELHPYRLLSV 188
RTG SSG+VCNPMTGYV I +PR SYLLLT DD + SELH +RLL+V
Sbjct: 139 RTGRSSGEVCNPMTGYVLPIPLPRKDLVTSYLLLTADDGVGLGPSSDDDSELHRFRLLAV 198
Query: 189 SL-HLTGTGRERRRIHVEMEALSPDAGSWGPTTAIPVEIAGGGEYGSPRA-LLIRTPAVV 246
L T GR R+ ++M+AL+P G WGPTT IPV GG + P A LL R P VV
Sbjct: 199 QLCQPTNQGR---RLRLKMQALTPVTGRWGPTTKIPVHGVGGDIHQHPGAELLGRHPVVV 255
Query: 247 DGVAYFLGGHPSLVFDLQYQRRQLPYDYFILCVDVS----GETEIGSATSPATITRLPTE 302
+G AYFL + QR P YFIL VDVS G+ G+ T ATI P
Sbjct: 256 NGAAYFL----VVSHSFDRQRPHPPSHYFILRVDVSDHGGGDGRNGT-TKAATIIPAPEG 310
Query: 303 L------RLLSSCTGEADVSPGQLLLVPPSSCGGGDRKSLALLVGRRTQVEIWAMNFGGG 356
L R SS A V+ QLLL P DR+S+ALLV R T+VEI ++
Sbjct: 311 LKPPSCSRCTSSEAAAAVVTSKQLLLTPSR-----DRRSVALLVCRTTRVEIHTLDMLAA 365
Query: 357 CGASARSAPRLLSVSCTRVVDLTTTGVHRSPCSPPLPVPESDEVFVWSGEASGAVVLRLR 416
A AR+ T VVD T V R PC + ES+ WSGEASGAVVLRL
Sbjct: 366 PSAWARA---------TEVVD--TAAVRRRPCD----LSESEVELHWSGEASGAVVLRLG 410
Query: 417 GTLCLLDRRTMAVRALGEDFSEFRDGPNGVFLPYEIGVSSWVPSIS 462
GT+C LDR TMA+R + E+F EFR + LPYE+G+SSWVPSIS
Sbjct: 411 GTVCQLDRATMAIRTIDEEFPEFRYRSRHMLLPYEMGLSSWVPSIS 456
>Os12g0461400
Length = 873
Score = 246 bits (627), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 185/393 (47%), Positives = 207/393 (52%), Gaps = 66/393 (16%)
Query: 1 MEEXXXXXXXXXXXXDMVVEIAERSDPITXXXXXXXXXXXXXVICGAAGFSRNLRLRNAD 60
MEE D+VVEIAERSDPIT VI G GF R+LRLRNAD
Sbjct: 1 MEEPPSSLSSPALPLDIVVEIAERSDPITLLRCAAACKHLRRVISGE-GFRRDLRLRNAD 59
Query: 61 GFVPGLLRGFFLQPRRPSPDP---DYQPLRFVXXXXXXXXXXXX------------XDQI 105
GFVPGLL GFF QPR PSP +Y PLRFV QI
Sbjct: 60 GFVPGLLHGFFFQPRCPSPHYHGYNYDPLRFVAAGRHDQLSAAEDIASGGSGGGGDTYQI 119
Query: 106 RSFVSSSDHVYGSIH-WRIEPVAARGGFVVLRTGDSSGKVCNPMTGYVRCIDMPRPWSSG 164
SFVS S+ V+ + RIEPVAARGGFVVLRTG SGKVCNPMTGY R IDMPR + G
Sbjct: 120 PSFVSDSNRVHKNKRSRRIEPVAARGGFVVLRTGKFSGKVCNPMTGYTRPIDMPRKTAKG 179
Query: 165 ---SYLLLTGDDAGVT---------SELHPYRLLSVSLHLTGTGRERRRIHVEMEALSPD 212
SYLL+T DD G SELH +RLL+V L R VE++ L+PD
Sbjct: 180 EGSSYLLITADDGGDGVDVGVTSDESELHRFRLLAVRLFA--------RTRVEVQELTPD 231
Query: 213 AGSWGPTTAIPVEIAGGGEYGSPRALLIRTPAVVDGVAYFLG---GHPSLVFDL------ 263
G+WGP T +PV Y P +L+R P V+ GVAYFLG G + L
Sbjct: 232 TGTWGPVTTLPV--VDADHYLHPHPVLVRPPVVIAGVAYFLGEMSGRDDQTYQLLLRMSL 289
Query: 264 -------QYQRRQLPYDYFILCVDVS----GETEIGSATSPATITRLPTELRLLSSCTGE 312
QY Y YFIL VDVS GET T+ ATI LPTELR S TGE
Sbjct: 290 DRESLGRQYHHSPPSYSYFILAVDVSIRRDGET---GTTAAATIMLLPTELR-APSYTGE 345
Query: 313 ADVSP--GQLLLVPPSSCGGGDRKSLALLVGRR 343
A V+P GQLLL PSSCGGG L +G R
Sbjct: 346 ATVTPTAGQLLLS-PSSCGGGRSNMRRLSLGCR 377
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.139 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,589,585
Number of extensions: 845049
Number of successful extensions: 2361
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2331
Number of HSP's successfully gapped: 5
Length of query: 463
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 359
Effective length of database: 11,605,545
Effective search space: 4166390655
Effective search space used: 4166390655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)