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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0464200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.26 (0.0163) R2 : 0.00213
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.034 (0.0344) R2dN8 : 0.00275 R2N8 : 0.00213
σ : 0.308
deviance : 43.45
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
38.19 0.29 3.27 0.167 0.221 -0.211 -0.13 -1.11 -0.0574 7.59 37.42 5916 -- --
39.87 0.294 3.26 0.0726 0.247 -0.24 -0.163 -- -0.0812 7.43 42.03 5009 -- --
38.23 0.288 3.27 0.166 0.222 -0.212 -- -1.12 -0.0575 7.73 36.14 5931 -- --
39.9 0.294 3.26 0.0698 0.251 -0.264 -- -- -0.0909 7.75 18.11 5038 -- --
40.85 0.298 3.27 0.166 -- -0.216 -- -1.09 -0.055 -- 36.41 5849 -- --
40.72 0.299 3.25 0.0625 0.219 -- -0.151 -- -0.0307 7.52 -- -- -- --
40.78 0.299 3.25 0.0594 0.218 -- -- -- -0.0302 7.7 -- -- -- --
42.5 0.304 3.27 0.0795 -- -0.249 -- -- -0.081 -- 38.37 5740 -- --
40.05 0.295 3.27 -- 0.253 -0.258 -- -- -0.0966 7.74 35.53 5041 -- --
43.35 0.308 3.26 0.0622 -- -- -- -- -0.0271 -- -- -- -- --
40.87 0.299 3.25 -- 0.219 -- -- -- -0.0369 7.68 -- -- -- --
42.67 0.304 3.27 -- -- -0.236 -- -- -0.0882 -- 34.28 5730 -- --
43.45 0.308 3.26 -- -- -- -- -- -0.034 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 37.07 atmosphere 1000 30 > th dose independent rect. 3 23
3 37.33 humidity 80 14400 < th dose dependent rect. 2 7
11 37.61 humidity 80 14400 < th dose dependent rect. 21 13
18 37.75 atmosphere 1005 10 > th dose dependent rect. 2 3
28 37.88 temperature 25 30 > th dose dependent rect. 6 1
31 37.92 humidity 70 14400 > th dose independent rect. 20 14
32 37.93 humidity 70 14400 > th dose independent rect. 7 3
45 37.95 humidity 70 14400 < th dose independent rect. 8 2
59 37.97 atmosphere 1010 30 < th dose independent rect. 6 1
60 37.98 atmosphere 995 720 > th dose independent rect. 7 8
63 38.04 radiation 10 30 < th dose independent rect. 6 1
70 38.11 temperature 25 720 > th dose independent rect. 1 1
73 38.15 humidity 90 720 < th dose independent rect. 1 2
75 38.17 temperature 25 720 > th dose dependent rect. 6 3
77 38.17 temperature 25 720 > th dose dependent rect. 3 6
79 38.19 humidity 90 1440 > th dose independent rect. 2 1
80 38.19 atmosphere 995 720 > th dose independent rect. 23 16
81 38.20 humidity 70 4320 > th dose independent rect. 10 1
95 38.24 atmosphere 1000 720 > th dose independent rect. 21 14
96 38.24 atmosphere 1010 10 < th dose dependent rect. 2 1
103 38.27 atmosphere 1000 90 > th dose independent rect. 11 18
104 38.27 temperature 25 90 > th dose dependent rect. 1 3
109 38.28 atmosphere 1000 30 < th dose independent rect. 7 20
124 38.30 temperature 25 90 > th dose independent rect. 1 3
132 38.31 temperature 25 1440 < th dose independent rect. 1 1
135 38.31 humidity 90 90 < th dose independent rect. 1 6
136 38.31 humidity 80 4320 < th dose independent rect. 7 6
151 38.31 temperature 25 30 > th dose dependent rect. 16 19
152 38.32 temperature 25 90 > th dose independent rect. 1 1
157 38.32 wind 3 30 > th dose dependent rect. 6 1
158 38.32 wind 1 14400 < th dose dependent rect. 6 1
174 38.33 wind 1 10 < th dose dependent rect. 2 1
178 38.35 humidity 70 4320 > th dose independent sin 3 NA
181 38.35 wind 3 14400 > th dose independent rect. 10 2
185 38.35 wind 5 14400 < th dose dependent rect. 11 1
186 38.36 humidity 70 4320 < th dose independent rect. 10 1
195 38.37 humidity 90 90 < th dose independent rect. 2 3
212 38.38 temperature 25 90 > th dose independent rect. 1 5
263 38.40 wind 3 14400 > th dose independent rect. 19 1
271 38.41 humidity 80 14400 < th dose dependent sin 8 NA
272 38.41 humidity 80 4320 > th dose dependent rect. 7 2
273 38.41 temperature 25 90 > th dose dependent rect. 1 5
274 38.41 humidity 70 4320 > th dose dependent rect. 6 7
286 38.42 humidity 50 14400 > th dose dependent rect. 8 1
287 38.42 atmosphere 1010 30 < th dose dependent rect. 6 1
288 38.42 humidity 50 4320 > th dose dependent rect. 11 2
290 38.42 humidity 70 4320 > th dose dependent rect. 6 5
321 38.43 atmosphere 1000 10 > th dose independent rect. 21 23
323 38.43 wind 1 14400 < th dose dependent rect. 4 4
329 38.43 humidity 50 4320 > th dose dependent rect. 3 11
334 38.44 wind 3 14400 < th dose independent rect. 10 2
367 38.45 humidity 50 4320 > th dose dependent rect. 23 15
369 38.46 wind 1 14400 < th dose independent rect. 4 3
392 38.46 wind 9 720 < th dose independent rect. 15 16
404 38.46 humidity 90 4320 < th dose dependent rect. 11 2
416 38.47 humidity 70 4320 < th dose independent sin 3 NA
461 38.47 atmosphere 1000 10 > th dose independent rect. 11 23
491 38.48 atmosphere 1000 10 > th dose independent rect. 10 20
506 38.48 humidity 90 4320 < th dose dependent rect. 6 9
508 38.48 temperature 25 30 > th dose dependent rect. 24 11
517 38.49 humidity 50 4320 > th dose dependent sin 4 NA
521 38.49 humidity 80 4320 < th dose dependent rect. 1 1
549 38.50 humidity 70 4320 > th dose independent rect. 16 23
590 38.52 wind 3 14400 < th dose independent rect. 19 1
640 38.52 temperature 25 30 > th dose dependent rect. 21 14
645 38.53 humidity 70 4320 > th dose independent no NA NA
654 38.53 atmosphere 1000 720 > th dose independent rect. 23 10
761 38.54 wind 1 14400 > th dose independent rect. 4 3
762 38.54 wind 5 14400 < th dose independent rect. 11 4
771 38.54 humidity 70 4320 > th dose independent rect. 10 23
772 38.54 humidity 70 4320 > th dose independent rect. 13 23
782 38.54 radiation 1 43200 < th dose dependent rect. 3 1
789 38.54 wind 1 14400 < th dose dependent rect. 2 6
810 38.55 wind 9 720 < th dose independent rect. 19 8
814 38.55 temperature 30 720 < th dose independent rect. 9 12
838 38.55 humidity 90 4320 < th dose dependent rect. 21 18
842 38.55 temperature 25 30 > th dose dependent rect. 14 21
889 38.56 humidity 90 4320 < th dose dependent rect. 23 16
900 38.57 wind 1 14400 > th dose independent rect. 1 2
939 38.58 humidity 90 4320 < th dose dependent sin 3 NA
975 38.59 atmosphere 1000 270 > th dose independent rect. 9 20
977 38.59 atmosphere 1000 90 > th dose independent rect. 9 23