BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0438100 Os12g0438100|AK108104
         (108 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0438100  Hypothetical protein                                135   9e-33
Os12g0438200                                                       89   5e-19

>Os12g0438100 Hypothetical protein
          Length = 108

 Score =  135 bits (339), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 72/108 (66%), Positives = 72/108 (66%)

Query: 1   MANCRRRMTSPXXXXXXXXXXXXXXQSRAWALDQLDDMVPMKTXXXXXXXXXXXXXXXXX 60
           MANCRRRMTSP              QSRAWALDQLDDMVPMKT                 
Sbjct: 1   MANCRRRMTSPLSSLVAVLLIVVAVQSRAWALDQLDDMVPMKTAKPVVVAIAGGGGSGVV 60

Query: 61  XXXXXPLCLQCRCCSKANPSNCQLTSCSSTFNCDPAGKCTLVQQRCGC 108
                PLCLQCRCCSKANPSNCQLTSCSSTFNCDPAGKCTLVQQRCGC
Sbjct: 61  GTLAAPLCLQCRCCSKANPSNCQLTSCSSTFNCDPAGKCTLVQQRCGC 108



>Os12g0438200 
          Length = 276

 Score = 89.4 bits (220), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 41/43 (95%), Positives = 42/43 (97%)

Query: 66  PLCLQCRCCSKANPSNCQLTSCSSTFNCDPAGKCTLVQQRCGC 108
           PLCLQCRCCSK NPSNC+LTSCSSTFNCDPAGKCTLVQQRCGC
Sbjct: 234 PLCLQCRCCSKTNPSNCELTSCSSTFNCDPAGKCTLVQQRCGC 276



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.130    0.467 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,674,318
Number of extensions: 60381
Number of successful extensions: 186
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 2
Length of query: 108
Length of database: 17,035,801
Length adjustment: 76
Effective length of query: 32
Effective length of database: 13,067,537
Effective search space: 418161184
Effective search space used: 418161184
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)