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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0438100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.95 (0.0229) R2 : 0.00241
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0506 (0.0482) R2dN8 : 0.00311 R2N8 : 0.00241
σ : 0.431
deviance : 85.43
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
63.72 0.372 1.02 -3.93 0.0898 221 -0.376 466 0.0811 4.04 15 90 -- --
84.59 0.432 2.95 -0.0479 0.101 -0.0689 -0.266 -- 0.0433 7.79 15 90 -- --
64.07 0.373 1.02 -3.92 0.0949 221 -- 466 0.0833 5.26 15 90 -- --
71.95 0.398 2.94 0.1 0.0986 -1.66 -- -- 0.0834 7.32 15.4 110 -- --
64.54 0.374 1.02 -3.92 -- 221 -- 466 0.0857 -- 15 90 -- --
84.6 0.431 2.95 -0.0508 0.101 -- -0.261 -- 0.0426 7.73 -- -- -- --
84.8 0.431 2.95 -0.0576 0.101 -- -- -- 0.0428 7.62 -- -- -- --
72.47 0.398 2.94 0.102 -- -1.66 -- -- 0.0851 -- 15.64 123 -- --
72.2 0.398 2.94 -- 0.0996 -1.6 -- -- 0.0716 7.26 15.4 110 -- --
85.35 0.432 2.95 -0.0562 -- -- -- -- 0.0444 -- -- -- -- --
84.88 0.431 2.95 -- 0.101 -- -- -- 0.0493 7.66 -- -- -- --
72.73 0.398 2.95 -- -- -1.61 -- -- 0.0731 -- 15.9 111 -- --
85.43 0.431 2.95 -- -- -- -- -- 0.0506 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 60.28 temperature 15.0 720 > th dose independent rect. 3 8
2 60.73 atmosphere 1015.0 720 < th dose independent rect. 23 16
3 61.04 temperature 15.0 1440 > th dose independent rect. 3 1
4 61.47 atmosphere 1015.0 1440 < th dose independent rect. 3 1
5 61.72 wind 9.0 10 < th dose independent rect. 3 23
6 61.78 atmosphere 1015.0 720 < th dose independent rect. 3 8
7 61.94 temperature 15.0 720 > th dose independent rect. 3 12
9 63.24 humidity 90.0 30 > th dose dependent rect. 9 5
13 63.27 humidity 90.0 30 > th dose independent rect. 9 5
15 63.27 humidity 90.0 30 > th dose dependent rect. 11 3
33 63.31 humidity 90.0 30 > th dose independent rect. 11 3
41 63.32 temperature 15.0 720 > th dose independent rect. 5 8
47 63.53 humidity 90.0 270 > th dose dependent rect. 8 6
48 63.54 radiation 1.0 720 < th dose independent rect. 8 3
50 63.54 radiation 1.0 720 < th dose dependent rect. 8 3
61 63.59 radiation 1.0 270 < th dose independent rect. 8 6
65 63.59 radiation 1.0 270 < th dose dependent rect. 8 6
69 63.61 temperature 15.0 90 > th dose independent sin 21 NA
70 63.61 temperature 15.0 90 > th dose independent sin 0 NA
72 63.62 atmosphere 1015.0 1440 < th dose independent rect. 17 1
74 63.62 atmosphere 1015.0 1440 < th dose independent rect. 15 4
91 63.66 atmosphere 1015.0 1440 < th dose independent rect. 13 1
93 63.67 temperature 15.0 4320 > th dose independent rect. 15 1
94 63.67 atmosphere 1015.0 1440 < th dose independent rect. 15 1
95 63.67 atmosphere 1015.0 1440 < th dose independent rect. 19 1
96 63.67 temperature 20.0 270 < th dose independent rect. 12 2
100 63.67 temperature 20.0 10 < th dose independent rect. 12 6
104 63.67 temperature 20.0 270 < th dose dependent rect. 12 2
129 63.69 temperature 20.0 10 < th dose independent rect. 12 4
139 63.69 humidity 90.0 270 > th dose independent rect. 9 5
156 63.69 temperature 20.0 10 < th dose dependent rect. 12 6
161 63.70 temperature 15.0 720 < th dose independent rect. 1 1
162 63.70 temperature 20.0 720 < th dose independent rect. 10 1
165 63.70 atmosphere 1015.0 1440 > th dose independent rect. 12 1
168 63.70 precipitation 0.1 720 > th dose independent rect. 10 1
169 63.70 temperature 20.0 90 < th dose independent rect. 9 2
178 63.70 temperature 20.0 10 < th dose independent rect. 9 3
200 63.70 atmosphere 1015.0 1440 < th dose independent rect. 13 6
201 63.70 wind 7.0 270 > th dose independent rect. 1 7
215 63.70 temperature 15.0 720 < th dose dependent rect. 1 1
216 63.70 temperature 20.0 720 < th dose dependent rect. 10 1
219 63.70 atmosphere 1015.0 1440 > th dose dependent rect. 12 1
222 63.70 precipitation 0.1 720 > th dose dependent rect. 10 1
223 63.70 temperature 20.0 90 < th dose dependent rect. 9 2
225 63.70 temperature 20.0 30 < th dose dependent rect. 12 2
227 63.70 temperature 15.0 4320 < th dose dependent rect. 12 2
233 63.70 temperature 20.0 10 < th dose dependent rect. 9 3
269 63.71 temperature 15.0 4320 < th dose independent rect. 12 1
285 63.71 atmosphere 1015.0 1440 < th dose independent rect. 13 3
307 63.71 wind 9.0 270 > th dose dependent rect. 9 1
308 63.71 wind 7.0 10 > th dose dependent rect. 12 1
389 63.72 temperature 15.0 90 > th dose independent no NA NA
391 63.72 temperature 15.0 90 < th dose independent sin 7 NA
439 63.72 temperature 15.0 90 < th dose independent no NA NA
461 63.72 atmosphere 1015.0 1440 > th dose independent rect. 1 1