BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0407500 Os12g0407500|AK100320
(658 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0407500 Tyrosine specific protein phosphatase and dual... 1207 0.0
AK121747 559 e-159
Os12g0407200 C2 calcium/lipid-binding region, CaLB domain c... 154 2e-37
>Os12g0407500 Tyrosine specific protein phosphatase and dual specificity protein
phosphatase domain containing protein
Length = 658
Score = 1207 bits (3123), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 590/658 (89%), Positives = 590/658 (89%)
Query: 1 MEEQQVKPSDSHPPPATPVDSQDSTAPPVRTPDPVSQATSNDSATQFXXXXXXXXXXXXX 60
MEEQQVKPSDSHPPPATPVDSQDSTAPPVRTPDPVSQATSNDSATQF
Sbjct: 1 MEEQQVKPSDSHPPPATPVDSQDSTAPPVRTPDPVSQATSNDSATQFASTVHVAPSPAPV 60
Query: 61 XXXXXIQDAAGREAQSSIFSTSGLSSWAKNLKIPQPSSGQESPTGKNTFXXXXXXXXXXX 120
IQDAAGREAQSSIFSTSGLSSWAKNLKIPQPSSGQESPTGKNTF
Sbjct: 61 PNAVPIQDAAGREAQSSIFSTSGLSSWAKNLKIPQPSSGQESPTGKNTFSRLTSGLGLRL 120
Query: 121 XPKGPQQDESAEGSTTPTTAQSGVFGSFTKGIVDSSKNAVKAVQVKARHMVSQNKRRYQE 180
PKGPQQDESAEGSTTPTTAQSGVFGSFTKGIVDSSKNAVKAVQVKARHMVSQNKRRYQE
Sbjct: 121 SPKGPQQDESAEGSTTPTTAQSGVFGSFTKGIVDSSKNAVKAVQVKARHMVSQNKRRYQE 180
Query: 181 GGFDLDMTYITENIIAMGFPAGDLSSGLFGYFEGFYRNHMEEVIRFFEMHHKGKYKVYNL 240
GGFDLDMTYITENIIAMGFPAGDLSSGLFGYFEGFYRNHMEEVIRFFEMHHKGKYKVYNL
Sbjct: 181 GGFDLDMTYITENIIAMGFPAGDLSSGLFGYFEGFYRNHMEEVIRFFEMHHKGKYKVYNL 240
Query: 241 CSERLYDASLFEGKVACFPFDDHNCPPIQLVISFCHSAYSWLKEDIENVVVVHCKAGKAR 300
CSERLYDASLFEGKVACFPFDDHNCPPIQLVISFCHSAYSWLKEDIENVVVVHCKAGKAR
Sbjct: 241 CSERLYDASLFEGKVACFPFDDHNCPPIQLVISFCHSAYSWLKEDIENVVVVHCKAGKAR 300
Query: 301 TGLMISSLLLYLKFFPTAEESIEYYNQKRCVDGKGLILPSQIRYVKYFERILTYFNGENQ 360
TGLMISSLLLYLKFFPTAEESIEYYNQKRCVDGKGLILPSQIRYVKYFERILTYFNGENQ
Sbjct: 301 TGLMISSLLLYLKFFPTAEESIEYYNQKRCVDGKGLILPSQIRYVKYFERILTYFNGENQ 360
Query: 361 PPRRCMLRGFRLHRCPYWIRPSITVSNHNGVLFTTKKHPRTKELMPEDFWFSAPKKGIMV 420
PPRRCMLRGFRLHRCPYWIRPSITVSNHNGVLFTTKKHPRTKELMPEDFWFSAPKKGIMV
Sbjct: 361 PPRRCMLRGFRLHRCPYWIRPSITVSNHNGVLFTTKKHPRTKELMPEDFWFSAPKKGIMV 420
Query: 421 FALPGEPGLTEVAGDFKIQFHDRQGDFYCWLNTTMMENRVTLNPTDLDDFDKRKLPSPGF 480
FALPGEPGLTEVAGDFKIQFHDRQGDFYCWLNTTMMENRVTLNPTDLDDFDKRKLPSPGF
Sbjct: 421 FALPGEPGLTEVAGDFKIQFHDRQGDFYCWLNTTMMENRVTLNPTDLDDFDKRKLPSPGF 480
Query: 481 QVEVVLVDYDGSQXXXXXXXXXSTDQKSEADSSTGTVAKGNNASSAEVSNKESARNDKDD 540
QVEVVLVDYDGSQ STDQKSEADSSTGTVAKGNNASSAEVSNKESARNDKDD
Sbjct: 481 QVEVVLVDYDGSQPPKPKPAAASTDQKSEADSSTGTVAKGNNASSAEVSNKESARNDKDD 540
Query: 541 VFSDSEAEDGSSKGRREKVSRNVEGTTNAAKASETSSVQKEASAAASRIEKVSITSEQGS 600
VFSDSEAEDGSSKGRREKVSRNVEGTTNAAKASETSSVQKEASAAASRIEKVSITSEQGS
Sbjct: 541 VFSDSEAEDGSSKGRREKVSRNVEGTTNAAKASETSSVQKEASAAASRIEKVSITSEQGS 600
Query: 601 ARTPDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFKAIAADASVFSFGDEDDYESE 658
ARTPDA EFKAIAADASVFSFGDEDDYESE
Sbjct: 601 ARTPDAAPLKSGVSSKSSSTTAPPPPPAAADSSMSEFKAIAADASVFSFGDEDDYESE 658
>AK121747
Length = 318
Score = 559 bits (1441), Expect = e-159, Method: Compositional matrix adjust.
Identities = 270/300 (90%), Positives = 270/300 (90%)
Query: 1 MEEQQVKPSDSHPPPATPVDSQDSTAPPVRTPDPVSQATSNDSATQFXXXXXXXXXXXXX 60
MEEQQVKPSDSHPPPATPVDSQDSTAPPVRTPDPVSQATSNDSATQF
Sbjct: 1 MEEQQVKPSDSHPPPATPVDSQDSTAPPVRTPDPVSQATSNDSATQFASTVHVAPSPAPV 60
Query: 61 XXXXXIQDAAGREAQSSIFSTSGLSSWAKNLKIPQPSSGQESPTGKNTFXXXXXXXXXXX 120
IQDAAGREAQSSIFSTSGLSSWAKNLKIPQPSSGQESPTGKNTF
Sbjct: 61 PNAVPIQDAAGREAQSSIFSTSGLSSWAKNLKIPQPSSGQESPTGKNTFSRLTSGLGLRL 120
Query: 121 XPKGPQQDESAEGSTTPTTAQSGVFGSFTKGIVDSSKNAVKAVQVKARHMVSQNKRRYQE 180
PKGPQQDESAEGSTTPTTAQSGVFGSFTKGIVDSSKNAVKAVQVKARHMVSQNKRRYQE
Sbjct: 121 SPKGPQQDESAEGSTTPTTAQSGVFGSFTKGIVDSSKNAVKAVQVKARHMVSQNKRRYQE 180
Query: 181 GGFDLDMTYITENIIAMGFPAGDLSSGLFGYFEGFYRNHMEEVIRFFEMHHKGKYKVYNL 240
GGFDLDMTYITENIIAMGFPAGDLSSGLFGYFEGFYRNHMEEVIRFFEMHHKGKYKVYNL
Sbjct: 181 GGFDLDMTYITENIIAMGFPAGDLSSGLFGYFEGFYRNHMEEVIRFFEMHHKGKYKVYNL 240
Query: 241 CSERLYDASLFEGKVACFPFDDHNCPPIQLVISFCHSAYSWLKEDIENVVVVHCKAGKAR 300
CSERLYDASLFEGKVACFPFDDHNCPPIQLVISFCHSAYSWLKEDIENVVVVHCKAGKAR
Sbjct: 241 CSERLYDASLFEGKVACFPFDDHNCPPIQLVISFCHSAYSWLKEDIENVVVVHCKAGKAR 300
>Os12g0407200 C2 calcium/lipid-binding region, CaLB domain containing protein
Length = 112
Score = 154 bits (389), Expect = 2e-37, Method: Composition-based stats.
Identities = 67/67 (100%), Positives = 67/67 (100%)
Query: 406 PEDFWFSAPKKGIMVFALPGEPGLTEVAGDFKIQFHDRQGDFYCWLNTTMMENRVTLNPT 465
PEDFWFSAPKKGIMVFALPGEPGLTEVAGDFKIQFHDRQGDFYCWLNTTMMENRVTLNPT
Sbjct: 13 PEDFWFSAPKKGIMVFALPGEPGLTEVAGDFKIQFHDRQGDFYCWLNTTMMENRVTLNPT 72
Query: 466 DLDDFDK 472
DLDDFDK
Sbjct: 73 DLDDFDK 79
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.130 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,070,699
Number of extensions: 851742
Number of successful extensions: 3600
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 3597
Number of HSP's successfully gapped: 3
Length of query: 658
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 551
Effective length of database: 11,448,903
Effective search space: 6308345553
Effective search space used: 6308345553
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 159 (65.9 bits)