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Os12g0407500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tyrosine specific protein phosphatase and dual specificity protein phosphatase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.1 (0.0113) R2 : 0.00984
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0507 (0.0238) R2dN8 : 0.0127 R2N8 : 0.00984
σ : 0.213
deviance : 20.83
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
18.03 0.2 12 0.234 0.119 0.0896 -0.125 1.52 0.0948 11.8 30.4 725 -- --
18.15 0.198 12 0.0884 0.118 0.259 -0.152 -- 0.0921 11.4 30.39 674 -- --
18.1 0.198 12 0.241 0.121 0.083 -- 1.57 0.0955 11.9 30.4 755 -- --
18.23 0.199 12 0.0776 0.119 0.261 -- -- 0.0925 11.6 30.4 705 -- --
18.92 0.203 12 0.232 -- 0.0344 -- 1.93 0.0865 -- 30.9 581 -- --
19.7 0.208 12.1 0.121 0.108 -- -0.138 -- 0.0663 13.5 -- -- -- --
19.77 0.208 12.1 0.117 0.11 -- -- -- 0.0657 14 -- -- -- --
19.04 0.203 12 0.0829 -- 0.246 -- -- 0.0858 -- 30.5 584 -- --
18.36 0.2 12 -- 0.125 0.26 -- -- 0.0885 11.9 30.4 780 -- --
20.49 0.212 12.1 0.112 -- -- -- -- 0.0632 -- -- -- -- --
20.13 0.21 12.1 -- 0.107 -- -- -- 0.0527 13.9 -- -- -- --
19.22 0.204 12.1 -- -- 0.259 -- -- 0.0771 -- 30.5 584 -- --
20.83 0.213 12.1 -- -- -- -- -- 0.0507 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 17.18 wind 1.0 270 < th dose dependent rect. 8 15
3 17.44 temperature 25.0 90 > th dose dependent rect. 17 14
5 17.48 temperature 25.0 90 > th dose dependent rect. 17 11
6 17.48 atmosphere 1015.0 30 < th dose dependent rect. 14 19
7 17.49 atmosphere 1015.0 270 < th dose dependent rect. 9 1
10 17.51 atmosphere 1015.0 10 < th dose dependent rect. 9 5
22 17.61 temperature 30.0 720 < th dose independent rect. 15 5
25 17.64 temperature 30.0 270 < th dose independent rect. 16 11
30 17.67 temperature 30.0 720 < th dose independent rect. 15 13
32 17.69 temperature 20.0 30 > th dose independent rect. 9 5
33 17.70 temperature 30.0 720 < th dose independent rect. 15 3
39 17.73 temperature 25.0 720 > th dose dependent rect. 16 3
41 17.74 temperature 25.0 720 > th dose dependent rect. 15 6
42 17.74 temperature 25.0 10 > th dose dependent rect. 18 10
43 17.74 temperature 25.0 10 > th dose dependent rect. 18 12
44 17.75 temperature 20.0 270 > th dose independent rect. 9 1
77 17.80 wind 1.0 270 < th dose dependent rect. 8 4
86 17.81 temperature 30.0 720 > th dose independent rect. 12 5
87 17.81 radiation 40.0 10 > th dose independent rect. 13 23
88 17.81 temperature 30.0 720 > th dose dependent rect. 14 1
105 17.83 wind 1.0 270 < th dose independent rect. 8 15
110 17.84 temperature 30.0 720 > th dose independent rect. 14 3
118 17.85 wind 1.0 270 < th dose independent rect. 8 2
121 17.85 humidity 90.0 30 < th dose independent rect. 9 5
137 17.86 temperature 30.0 720 < th dose independent rect. 24 20
138 17.86 temperature 30.0 720 < th dose independent rect. 15 21
152 17.87 temperature 10.0 30 > th dose dependent rect. 9 5
162 17.88 temperature 25.0 90 > th dose independent rect. 17 11
168 17.89 temperature 30.0 720 < th dose independent rect. 8 19
177 17.89 temperature 25.0 10 > th dose dependent rect. 14 19
190 17.91 temperature 25.0 90 > th dose independent rect. 17 13
199 17.91 temperature 10.0 30 > th dose dependent rect. 14 19
202 17.92 temperature 30.0 720 < th dose independent rect. 8 12
205 17.92 radiation 40.0 10 < th dose independent rect. 10 23
216 17.93 humidity 70.0 270 > th dose independent rect. 16 11
221 17.93 temperature 25.0 720 > th dose dependent sin 14 NA
265 17.95 radiation 1.0 10 > th dose dependent rect. 9 3
266 17.95 radiation 1.0 10 > th dose dependent rect. 9 5
272 17.95 radiation 30.0 10 > th dose dependent rect. 13 23
274 17.96 temperature 30.0 720 < th dose independent rect. 9 1
292 17.96 temperature 30.0 720 < th dose independent rect. 22 22
299 17.97 wind 1.0 270 < th dose independent rect. 8 4
302 17.97 wind 1.0 30 > th dose independent rect. 14 19
303 17.97 temperature 30.0 720 < th dose independent rect. 15 19
306 17.97 temperature 25.0 270 > th dose dependent sin 12 NA
307 17.97 wind 1.0 270 < th dose dependent rect. 22 1
318 17.98 radiation 40.0 10 > th dose independent rect. 9 3
330 17.98 temperature 25.0 10 > th dose independent rect. 17 11
365 17.99 temperature 30.0 720 > th dose independent sin 19 NA
394 18.00 precipitation 0.1 30 < th dose independent rect. 14 19
406 18.00 precipitation 0.1 30 < th dose dependent rect. 14 19
415 18.01 wind 9.0 270 < th dose dependent rect. 9 1
423 18.02 atmosphere 1010.0 270 < th dose independent rect. 9 1
424 18.02 radiation 1.0 270 > th dose independent rect. 9 1
439 18.03 humidity 70.0 720 > th dose independent rect. 17 1
444 18.03 radiation 1.0 30 > th dose independent rect. 14 19
488 18.04 temperature 30.0 720 < th dose independent sin 18 NA
491 18.04 temperature 20.0 30 > th dose independent rect. 9 3
552 18.05 temperature 30.0 720 < th dose independent rect. 11 9
558 18.05 radiation 20.0 270 < th dose independent rect. 15 12
584 18.06 temperature 30.0 720 > th dose independent no NA NA
604 18.06 temperature 30.0 720 < th dose independent rect. 10 15
626 18.06 wind 9.0 10 < th dose independent rect. 14 19
702 18.07 atmosphere 1005.0 90 > th dose independent rect. 17 11
718 18.07 radiation 30.0 270 < th dose dependent rect. 15 12
720 18.08 humidity 90.0 270 < th dose independent rect. 9 1
722 18.08 temperature 10.0 1440 > th dose independent rect. 10 5
729 18.08 temperature 10.0 1440 > th dose independent rect. 15 19
738 18.08 temperature 30.0 720 > th dose dependent sin 23 NA
750 18.09 temperature 30.0 720 < th dose independent no NA NA
752 18.09 wind 9.0 30 < th dose independent rect. 9 5
753 18.09 radiation 1.0 30 > th dose independent rect. 9 5
763 18.09 temperature 30.0 720 > th dose dependent sin 21 NA
784 18.09 atmosphere 995.0 270 > th dose dependent rect. 16 11
814 18.09 atmosphere 1015.0 30 < th dose dependent rect. 12 21
821 18.10 temperature 10.0 30 > th dose independent rect. 9 5
823 18.10 atmosphere 995.0 30 > th dose independent rect. 9 5
824 18.10 atmosphere 1015.0 30 < th dose independent rect. 9 5
825 18.10 precipitation 0.1 30 < th dose independent rect. 9 5
830 18.10 temperature 10.0 30 > th dose independent rect. 14 19
834 18.10 temperature 30.0 720 > th dose independent rect. 16 23
841 18.10 precipitation 0.1 30 < th dose dependent rect. 9 5
893 18.11 humidity 50.0 30 > th dose independent rect. 9 5
903 18.11 radiation 40.0 30 < th dose independent rect. 14 19
906 18.11 radiation 40.0 10 < th dose independent rect. 21 23
908 18.11 temperature 15.0 30 > th dose dependent rect. 9 3
948 18.12 temperature 30.0 720 < th dose independent rect. 10 23
951 18.12 temperature 30.0 720 < th dose independent rect. 19 23
953 18.12 temperature 30.0 720 > th dose dependent no NA NA