BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0267900 Os12g0267900|AK072042
         (391 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0267900  Zinc finger, RING-type domain containing protein    522   e-148

>Os12g0267900 Zinc finger, RING-type domain containing protein
          Length = 391

 Score =  522 bits (1345), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 268/360 (74%), Positives = 268/360 (74%)

Query: 32  FLSPRFRSAAAQAGWDEESLLHAALVVEDTPVREXXXXXXXXXXXXXXXXXXXXXXNTRK 91
           FLSPRFRSAAAQAGWDEESLLHAALVVEDTPVRE                      NTRK
Sbjct: 32  FLSPRFRSAAAQAGWDEESLLHAALVVEDTPVRESRRRRRASTTSSSAGGGGSAGSNTRK 91

Query: 92  RRSWRQPPGSIPPVVFLLDDDEKKPDTTADXXXXXXXXXXXXXXXXXXXACSEKAAATSE 151
           RRSWRQPPGSIPPVVFLLDDDEKKPDTTAD                   ACSEKAAATSE
Sbjct: 92  RRSWRQPPGSIPPVVFLLDDDEKKPDTTADGKKEVKEEEKKTVVVGEKEACSEKAAATSE 151

Query: 152 LPCMDRLREELSCAICLEICFEPSTTPCGHSFCMKCLKHAAAKCGKRCPKCRQLISNSRS 211
           LPCMDRLREELSCAICLEICFEPSTTPCGHSFCMKCLKHAAAKCGKRCPKCRQLISNSRS
Sbjct: 152 LPCMDRLREELSCAICLEICFEPSTTPCGHSFCMKCLKHAAAKCGKRCPKCRQLISNSRS 211

Query: 212 CTVNTVLWNTIQLLFPSETEARRTSIASSSETNDDLAQQISQRSNSMAQXXXXXXXXXXX 271
           CTVNTVLWNTIQLLFPSETEARRTSIASSSETNDDLAQQISQRSNSMAQ           
Sbjct: 212 CTVNTVLWNTIQLLFPSETEARRTSIASSSETNDDLAQQISQRSNSMAQGGIRSSSSNGI 271

Query: 272 XXXXXXXXXXXXXXXXXXXXXXXXXXXXVAQEGSSTATGRGFVRASQLVPSARVVSVRSH 331
                                       VAQEGSSTATGRGFVRASQLVPSARVVSVRSH
Sbjct: 272 GYITQRSTRSSATNNRSFTTTGSRRSTFVAQEGSSTATGRGFVRASQLVPSARVVSVRSH 331

Query: 332 QSDDAALAYRLQQEEFMTAFESEGERQPPXXXXXXXXXXXXNLRAMASRAIRLRARGWPV 391
           QSDDAALAYRLQQEEFMTAFESEGERQPP            NLRAMASRAIRLRARGWPV
Sbjct: 332 QSDDAALAYRLQQEEFMTAFESEGERQPPRSSSSTVSAARANLRAMASRAIRLRARGWPV 391



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.127    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,292,054
Number of extensions: 296632
Number of successful extensions: 1036
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1036
Number of HSP's successfully gapped: 2
Length of query: 391
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 288
Effective length of database: 11,657,759
Effective search space: 3357434592
Effective search space used: 3357434592
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)