Os12g0267900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os12g0267900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 344.89 | 0.873 | 6.04 | -1.08 | 4.51 | -1.14 | -2.41 | -0.495 | 0.407 | 23.1 | 22.4 | 598 | -- | -- |
| 345.81 | 0.866 | 6.05 | -1.17 | 4.49 | -1.15 | -2.57 | -- | 0.413 | 23 | 22.3 | 621 | -- | -- |
| 368.51 | 0.894 | 6.06 | -1.14 | 4.53 | -1.15 | -- | -0.0947 | 0.369 | 23.1 | 22.3 | 578 | -- | -- |
| 368.04 | 0.893 | 6.06 | -1.19 | 4.52 | -1.19 | -- | -- | 0.375 | 23.1 | 22.1 | 590 | -- | -- |
| 1288.57 | 1.67 | 6.1 | -1.73 | -- | -3.53 | -- | 1.8 | -0.0116 | -- | 25.29 | 826 | -- | -- |
| 410.82 | 0.95 | 5.98 | -0.884 | 4.67 | -- | -2.43 | -- | 0.759 | 23 | -- | -- | -- | -- |
| 435.79 | 0.978 | 5.97 | -0.785 | 4.68 | -- | -- | -- | 0.767 | 23 | -- | -- | -- | -- |
| 1275.87 | 1.66 | 6.12 | -1.76 | -- | -3.57 | -- | -- | -0.448 | -- | 25.2 | 848 | -- | -- |
| 402.02 | 0.934 | 6.01 | -- | 4.55 | -0.974 | -- | -- | 0.556 | 23 | 22.36 | 570 | -- | -- |
| 1796.83 | 1.98 | 5.85 | -0.682 | -- | -- | -- | -- | 0.801 | -- | -- | -- | -- | -- |
| 452.04 | 0.995 | 5.95 | -- | 4.67 | -- | -- | -- | 0.855 | 23 | -- | -- | -- | -- |
| 1352.38 | 1.71 | 6.07 | -- | -- | -3.22 | -- | -- | -0.17 | -- | 25.3 | 828 | -- | -- |
| 1809.09 | 1.99 | 5.84 | -- | -- | -- | -- | -- | 0.877 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 335.73 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 5 |
| 2 | 337.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 5 |
| 18 | 343.03 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 11 |
| 21 | 343.58 | temperature | 20 | 720 | > th | dose dependent | sin | 10 | NA |
| 23 | 343.98 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 47 | 346.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 50 | 346.79 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 57 | 347.22 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 13 |
| 75 | 348.33 | temperature | 25 | 720 | < th | dose dependent | sin | 12 | NA |
| 100 | 348.87 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 7 |
| 138 | 349.81 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 12 |
| 143 | 349.98 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 13 |
| 247 | 352.42 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 2 |
| 311 | 353.57 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 21 |
| 370 | 354.44 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 389 | 354.70 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 598 | 357.49 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 5 |
| 643 | 358.19 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 736 | 359.56 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 742 | 359.60 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 13 |
| 763 | 359.82 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 808 | 360.34 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 3 |
| 822 | 360.47 | temperature | 25 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 878 | 360.91 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 958 | 361.29 | temperature | 25 | 1440 | < th | dose independent | rect. | 18 | 1 |
| 981 | 361.41 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 1 |