BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0193200 Os12g0193200|AK100343
(665 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0193200 mRNA capping enzyme family protein 1344 0.0
Os11g0217500 mRNA capping enzyme family protein 529 e-150
>Os12g0193200 mRNA capping enzyme family protein
Length = 665
Score = 1344 bits (3478), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 651/665 (97%), Positives = 651/665 (97%)
Query: 1 MDLNASPSPEEDDQSYEEHADFSQSEHAESAVEIMXXXXXXXXXXXXXXQHDDGPRLNRQ 60
MDLNASPSPEEDDQSYEEHADFSQSEHAESAVEIM QHDDGPRLNRQ
Sbjct: 1 MDLNASPSPEEDDQSYEEHADFSQSEHAESAVEIMRREREERRRKLKREQHDDGPRLNRQ 60
Query: 61 PIRNDHMNQNKIIRHGRIKEPPQGWLDCPGSGEPIDRIVPSKVPLDETFNESVPAGKRYS 120
PIRNDHMNQNKIIRHGRIKEPPQGWLDCPGSGEPIDRIVPSKVPLDETFNESVPAGKRYS
Sbjct: 61 PIRNDHMNQNKIIRHGRIKEPPQGWLDCPGSGEPIDRIVPSKVPLDETFNESVPAGKRYS 120
Query: 121 SKQVVNKQRKAGRDIGLVIDLTNTTRYYSPTEWTRQGTKYVKIACKGRDAVPDNESVNTF 180
SKQVVNKQRKAGRDIGLVIDLTNTTRYYSPTEWTRQGTKYVKIACKGRDAVPDNESVNTF
Sbjct: 121 SKQVVNKQRKAGRDIGLVIDLTNTTRYYSPTEWTRQGTKYVKIACKGRDAVPDNESVNTF 180
Query: 181 VYEVMAFLDRQKQSRNPKYILVHCTHGHNRTGFMIVHYLMRTQLSSVTEALNIFAQRRPP 240
VYEVMAFLDRQKQSRNPKYILVHCTHGHNRTGFMIVHYLMRTQLSSVTEALNIFAQRRPP
Sbjct: 181 VYEVMAFLDRQKQSRNPKYILVHCTHGHNRTGFMIVHYLMRTQLSSVTEALNIFAQRRPP 240
Query: 241 GIYKNDYIQAIYSFYHEIPENIVCPPTPEWKRPSDLDLNGEAKQDDDDDGNVDRAPSPNH 300
GIYKNDYIQAIYSFYHEIPENIVCPPTPEWKRPSDLDLNGEAKQDDDDDGNVDRAPSPNH
Sbjct: 241 GIYKNDYIQAIYSFYHEIPENIVCPPTPEWKRPSDLDLNGEAKQDDDDDGNVDRAPSPNH 300
Query: 301 EDDKVITNDDILGDAVPYDQQDFLRSICFRLLELVPSGRANAQFPGSHPVSLNSENLQIL 360
EDDKVITNDDILGDAVPYDQQDFLRSICFRLLELVPSGRANAQFPGSHPVSLNSENLQIL
Sbjct: 301 EDDKVITNDDILGDAVPYDQQDFLRSICFRLLELVPSGRANAQFPGSHPVSLNSENLQIL 360
Query: 361 RQRYYYATWKADGTRYMMLITRDGCFLIDRNFCFRRVQMRFPLRNSNEGFHHYTLIDGEM 420
RQRYYYATWKADGTRYMMLITRDGCFLIDRNFCFRRVQMRFPLRNSNEGFHHYTLIDGEM
Sbjct: 361 RQRYYYATWKADGTRYMMLITRDGCFLIDRNFCFRRVQMRFPLRNSNEGFHHYTLIDGEM 420
Query: 421 IVDTVPDLGLKRRYLAYDLMSINSQSVVKLPFSERWKLLDDEIIRPRYHDKGRSPSYKYD 480
IVDTVPDLGLKRRYLAYDLMSINSQSVVKLPFSERWKLLDDEIIRPRYHDKGRSPSYKYD
Sbjct: 421 IVDTVPDLGLKRRYLAYDLMSINSQSVVKLPFSERWKLLDDEIIRPRYHDKGRSPSYKYD 480
Query: 481 MELFSVRRKDFWQLSAVNKILKEFIPKLCHESDGLILQGWDDPYVTRTHEGLLKWKYPEM 540
MELFSVRRKDFWQLSAVNKILKEFIPKLCHESDGLILQGWDDPYVTRTHEGLLKWKYPEM
Sbjct: 481 MELFSVRRKDFWQLSAVNKILKEFIPKLCHESDGLILQGWDDPYVTRTHEGLLKWKYPEM 540
Query: 541 NSVDFLFEIGSENRQFIFLYERGRKKLMDGARVVFPDEVDPPSISGKIVECSWNKEEDCW 600
NSVDFLFEIGSENRQFIFLYERGRKKLMDGARVVFPDEVDPPSISGKIVECSWNKEEDCW
Sbjct: 541 NSVDFLFEIGSENRQFIFLYERGRKKLMDGARVVFPDEVDPPSISGKIVECSWNKEEDCW 600
Query: 601 SCMRIRTDKSTPNDINTYRKVMRSITDNITEDKLLEEIYEIMNLPMYADRKAKAHARSMA 660
SCMRIRTDKSTPNDINTYRKVMRSITDNITEDKLLEEIYEIMNLPMYADRKAKAHARSMA
Sbjct: 601 SCMRIRTDKSTPNDINTYRKVMRSITDNITEDKLLEEIYEIMNLPMYADRKAKAHARSMA 660
Query: 661 QQRRR 665
QQRRR
Sbjct: 661 QQRRR 665
>Os11g0217500 mRNA capping enzyme family protein
Length = 329
Score = 529 bits (1363), Expect = e-150, Method: Compositional matrix adjust.
Identities = 251/322 (77%), Positives = 281/322 (87%), Gaps = 9/322 (2%)
Query: 351 SLNSENLQILRQRYYYATWKADGTRYMMLITRDGCFLIDRNFCFRRVQMRFPLRNSNEGF 410
+L SENLQ+LRQRYY+ATWKADGTRYMMLI RDGCFLIDRNFCFRRVQMRFP RN NEG
Sbjct: 10 TLRSENLQLLRQRYYFATWKADGTRYMMLIMRDGCFLIDRNFCFRRVQMRFPHRNLNEGL 69
Query: 411 HHYTLIDGEMIVDTVPDLGLKRRYLAYDLMSINSQSVVKLPFSERWKLLDDEIIRPRYHD 470
H TLIDGEMI+DTVPD GLKRRYLAYDLM++++ S KLPFSERW+LL+DEIIRPRY++
Sbjct: 70 HEMTLIDGEMIIDTVPDSGLKRRYLAYDLMALDAVSKTKLPFSERWRLLEDEIIRPRYYE 129
Query: 471 KGR-------SPSYKYDMELFSVRRKDFWQLSAVNKILKEFIPKLCHESDGLILQGWDDP 523
K + +P YKYDMELFSVRRKDFW LS V K+LKEFIP L H++DGLI QGWDDP
Sbjct: 130 KKQFESGVKSNPMYKYDMELFSVRRKDFWLLSTVTKLLKEFIPSLSHDADGLIFQGWDDP 189
Query: 524 YVTRTHEGLLKWKYPEMNSVDFLFEIGSENRQFIFLYERGRKKLMDGARVVFPDEVDPPS 583
YVTRTHEGLLKWKYP MNSVDFLFE+G +NRQ +FLYERG+KKLMDG+R+ FP+E DP S
Sbjct: 190 YVTRTHEGLLKWKYPSMNSVDFLFEVGGDNRQLVFLYERGKKKLMDGSRIAFPNE-DPSS 248
Query: 584 ISGKIVECSWNKEEDCWSCMRIRTDKSTPNDINTYRKVMRSITDNITEDKLLEEIYEIMN 643
ISG+IVECSWNKEE CW CMRIR+DKSTPNDINTYRKVMRSITDNITE+KLLEEI+EI
Sbjct: 249 ISGRIVECSWNKEEGCWVCMRIRSDKSTPNDINTYRKVMRSITDNITEEKLLEEIHEITR 308
Query: 644 LPMYADRKAKAHARSMAQQRRR 665
LPMYADR +A A+ MAQ RRR
Sbjct: 309 LPMYADRIKQAQAK-MAQHRRR 329
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.137 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 25,047,236
Number of extensions: 1146421
Number of successful extensions: 3078
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 3076
Number of HSP's successfully gapped: 2
Length of query: 665
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 558
Effective length of database: 11,448,903
Effective search space: 6388487874
Effective search space used: 6388487874
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)