BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0189700 Os12g0189700|Os12g0189700
         (226 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0189700  Tetratricopeptide-like helical domain containi...   256   7e-69

>Os12g0189700 Tetratricopeptide-like helical domain containing protein
          Length = 226

 Score =  256 bits (655), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 137/198 (69%), Positives = 137/198 (69%)

Query: 29  CRFVLPPTRRHXXXXXXXXXXXXXXXXXXXXXXXXXEDDDAVTSYDPVTXXXXXXXXXXX 88
           CRFVLPPTRRH                         EDDDAVTSYDPVT           
Sbjct: 29  CRFVLPPTRRHLLASSASSLLLAAAAAAAAPRAASSEDDDAVTSYDPVTAAERAASASVS 88

Query: 89  XXXXXXXXLLDLGRDLQARGEFPAALASFTAVATEYGDLSLSGYARVGRALVLYEVGDRD 148
                   LLDLGRDLQARGEFPAALASFTAVATEYGDLSLSGYARVGRALVLYEVGDRD
Sbjct: 89  RRVGEAVRLLDLGRDLQARGEFPAALASFTAVATEYGDLSLSGYARVGRALVLYEVGDRD 148

Query: 149 DAIAEMEDASVALRGYPEIHXXXXXXXXXXXXXXXXXENQFAIATLLDPHYTDLAYVRDT 208
           DAIAEMEDASVALRGYPEIH                 ENQFAIATLLDPHYTDLAYVRDT
Sbjct: 149 DAIAEMEDASVALRGYPEIHAALAAALYADKHAALLAENQFAIATLLDPHYTDLAYVRDT 208

Query: 209 KHWPPSLVDSLRHFITLS 226
           KHWPPSLVDSLRHFITLS
Sbjct: 209 KHWPPSLVDSLRHFITLS 226



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,733,574
Number of extensions: 125618
Number of successful extensions: 223
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 129
Effective length of database: 11,971,043
Effective search space: 1544264547
Effective search space used: 1544264547
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)