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Os12g0189700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.4 (0.0148) R2 : 0.607
β1 : -0.721 (0.0544) R2dD : 0.158 R2D : -0.000296
β2 : 0.683 (0.0373) R2dC : 0.29 R2C : 0.19
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.54 (0.0317) R2dN8 : 0.336 R2N8 : 0.169
σ : 0.279
deviance : 35.53
__
_____
C
peak time of C : 3.45
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
32.47 0.265 13.4 -0.938 0.69 -0.735 -0.186 2.33 -0.52 3.46 1000 10 -- --
32.39 0.267 13.4 -0.785 0.693 -0.327 -0.176 -- -0.519 3.46 1000 16 -- --
32.41 0.267 13.4 -0.939 0.691 -0.729 -- 2.28 -0.518 3.47 1000 9 -- --
32.48 0.267 13.4 -0.782 0.692 -0.329 -- -- -0.518 3.45 1000 4 -- --
59.07 0.36 13.4 -1.02 -- -0.998 -- 4.03 -0.502 -- 1000 9 -- --
35.4 0.279 13.4 -0.725 0.684 -- -0.205 -- -0.542 3.46 -- -- -- --
35.53 0.279 13.4 -0.721 0.683 -- -- -- -0.54 3.45 -- -- -- --
59.31 0.36 13.4 -0.746 -- -0.29 -- -- -0.502 -- 1000 4 -- --
47.68 0.323 13.3 -- 0.678 -0.213 -- -- -0.437 3.45 1002 8 -- --
61.69 0.367 13.4 -0.693 -- -- -- -- -0.522 -- -- -- -- --
49.25 0.328 13.3 -- 0.669 -- -- -- -0.46 3.46 -- -- -- --
73.38 0.4 13.3 -- -- -0.166 -- -- -0.427 -- 1002 5 -- --
74.34 0.402 13.3 -- -- -- -- -- -0.445 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 29.42 atmosphere 1000.0 10 > th dose independent rect. 12 20
2 29.50 temperature 10.0 10 > th dose dependent rect. 8 16
6 29.65 temperature 20.0 270 > th dose independent rect. 6 5
8 29.76 atmosphere 1000.0 10 > th dose independent rect. 24 8
11 29.93 temperature 20.0 270 > th dose independent rect. 7 3
12 29.94 temperature 15.0 270 > th dose dependent rect. 6 5
13 29.97 temperature 15.0 90 > th dose independent rect. 8 16
15 29.97 atmosphere 1000.0 270 > th dose independent rect. 11 19
18 30.01 temperature 15.0 270 > th dose dependent rect. 7 3
25 30.15 temperature 20.0 270 > th dose independent rect. 8 1
30 30.18 temperature 15.0 270 > th dose dependent rect. 8 1
43 30.30 humidity 50.0 14400 > th dose independent rect. 1 8
44 30.30 atmosphere 1000.0 30 > th dose independent rect. 24 19
54 30.38 wind 9.0 14400 > th dose dependent rect. 21 17
60 30.43 temperature 15.0 10 > th dose independent rect. 8 16
63 30.44 temperature 15.0 10 > th dose dependent rect. 8 4
67 30.49 wind 9.0 14400 > th dose dependent sin 5 NA
76 30.54 wind 9.0 14400 > th dose dependent rect. 3 11
83 30.56 wind 9.0 14400 > th dose independent rect. 21 17
89 30.59 temperature 15.0 10 > th dose dependent rect. 8 6
91 30.60 temperature 20.0 10 > th dose independent rect. 8 6
95 30.61 atmosphere 1015.0 1440 < th dose independent rect. 2 7
109 30.66 wind 9.0 14400 > th dose independent rect. 3 11
123 30.69 atmosphere 995.0 30 > th dose dependent rect. 24 8
133 30.72 temperature 20.0 10 > th dose independent rect. 8 4
135 30.72 atmosphere 1000.0 270 > th dose independent rect. 22 9
136 30.72 temperature 15.0 270 > th dose independent rect. 18 17
140 30.73 wind 9.0 14400 > th dose independent sin 5 NA
148 30.74 precipitation 0.1 10 < th dose independent rect. 8 16
151 30.74 precipitation 0.1 10 < th dose dependent rect. 8 16
172 30.79 atmosphere 1000.0 10 > th dose independent rect. 24 23
197 30.85 temperature 10.0 270 > th dose dependent rect. 18 17
220 30.91 humidity 70.0 10 > th dose independent rect. 24 8
233 30.93 wind 9.0 14400 > th dose dependent rect. 9 5
236 30.94 wind 9.0 10 < th dose independent rect. 8 16
243 30.97 humidity 60.0 270 > th dose independent rect. 6 5
244 30.97 wind 9.0 10 < th dose independent rect. 24 8
245 30.97 temperature 10.0 10 > th dose independent rect. 24 8
246 30.97 temperature 30.0 10 < th dose independent rect. 24 8
247 30.97 humidity 50.0 10 > th dose independent rect. 24 8
250 30.97 radiation 30.0 10 < th dose independent rect. 24 8
256 30.97 atmosphere 995.0 10 > th dose dependent rect. 12 20
262 30.99 atmosphere 1015.0 10 < th dose independent rect. 24 8
285 31.02 temperature 10.0 1440 > th dose independent rect. 1 8
288 31.02 humidity 50.0 1440 > th dose independent rect. 1 8
290 31.02 atmosphere 995.0 1440 > th dose independent rect. 1 8
291 31.02 temperature 10.0 1440 > th dose independent rect. 9 16
340 31.10 wind 9.0 14400 > th dose independent rect. 9 5
342 31.10 humidity 90.0 90 < th dose independent rect. 7 6
350 31.11 humidity 90.0 10 < th dose independent rect. 8 4
353 31.12 wind 9.0 14400 > th dose independent rect. 11 3
354 31.12 wind 9.0 1440 < th dose independent rect. 1 8
356 31.12 wind 9.0 14400 < th dose independent rect. 1 13
370 31.14 wind 9.0 14400 < th dose independent rect. 21 17
374 31.15 precipitation 0.1 30 < th dose independent rect. 24 8
378 31.15 precipitation 0.1 30 < th dose dependent rect. 24 8
391 31.19 radiation 1.0 270 > th dose independent rect. 7 3
400 31.20 humidity 60.0 270 > th dose independent rect. 7 3
417 31.22 temperature 30.0 90 < th dose dependent rect. 24 18
427 31.24 wind 9.0 14400 < th dose independent sin 5 NA
467 31.28 humidity 50.0 30 > th dose independent rect. 8 16
469 31.28 wind 9.0 30 < th dose dependent rect. 24 8
480 31.30 radiation 40.0 270 < th dose independent rect. 7 2
482 31.30 radiation 1.0 270 > th dose independent rect. 6 5
495 31.31 radiation 10.0 270 < th dose independent rect. 22 9
502 31.32 wind 9.0 14400 > th dose independent rect. 15 1
513 31.33 atmosphere 1015.0 10 < th dose dependent rect. 8 16
528 31.34 humidity 50.0 30 > th dose dependent rect. 24 8
544 31.36 wind 9.0 14400 < th dose independent rect. 21 19
558 31.38 wind 1.0 30 > th dose independent rect. 8 16
563 31.39 radiation 1.0 270 > th dose independent rect. 8 1
574 31.40 wind 1.0 270 > th dose independent rect. 7 3
581 31.41 wind 9.0 14400 < th dose independent rect. 15 1
582 31.41 precipitation 0.1 1440 < th dose independent rect. 9 4
588 31.41 precipitation 0.1 1440 < th dose dependent rect. 9 4
594 31.41 temperature 10.0 270 > th dose dependent rect. 16 20
600 31.42 atmosphere 1015.0 10 < th dose independent rect. 8 16
627 31.45 wind 1.0 30 > th dose independent rect. 8 6
629 31.45 temperature 15.0 270 > th dose independent rect. 16 8
636 31.46 wind 1.0 270 > th dose independent rect. 6 5
637 31.46 wind 7.0 270 < th dose independent rect. 6 5
638 31.46 precipitation 0.1 270 < th dose independent rect. 6 5
643 31.46 wind 9.0 14400 > th dose dependent rect. 15 1
646 31.46 precipitation 0.1 270 < th dose dependent rect. 6 5
658 31.47 radiation 40.0 10 < th dose independent rect. 12 20
661 31.47 radiation 40.0 90 < th dose dependent rect. 24 8
692 31.50 atmosphere 995.0 270 > th dose independent rect. 6 5
693 31.50 atmosphere 1015.0 270 < th dose independent rect. 6 5
696 31.50 wind 1.0 270 > th dose independent rect. 7 15
698 31.50 radiation 1.0 270 > th dose independent rect. 18 17
700 31.50 temperature 10.0 270 > th dose independent rect. 11 19
712 31.52 wind 7.0 10 < th dose independent rect. 8 4
715 31.52 wind 7.0 10 < th dose independent rect. 8 6
730 31.52 atmosphere 1000.0 270 > th dose independent rect. 22 20
732 31.52 atmosphere 1000.0 10 > th dose independent rect. 11 23
758 31.54 radiation 20.0 270 < th dose dependent rect. 22 9
772 31.56 humidity 60.0 270 > th dose independent rect. 18 17
783 31.57 wind 7.0 270 < th dose independent rect. 7 3
788 31.57 wind 9.0 270 < th dose independent rect. 11 19
803 31.59 precipitation 0.1 270 < th dose independent rect. 7 3
805 31.59 precipitation 0.1 270 < th dose dependent rect. 7 3
819 31.61 wind 9.0 14400 < th dose independent rect. 11 3
821 31.61 humidity 50.0 10 > th dose independent rect. 8 6
822 31.61 radiation 1.0 270 > th dose independent rect. 4 7
854 31.63 atmosphere 995.0 270 > th dose independent rect. 7 3
855 31.63 atmosphere 1015.0 270 < th dose independent rect. 7 3
861 31.63 temperature 10.0 270 > th dose independent rect. 10 21
876 31.65 radiation 1.0 10 > th dose independent rect. 8 6
878 31.65 atmosphere 995.0 270 > th dose independent rect. 11 7
881 31.65 atmosphere 995.0 30 > th dose independent rect. 8 16
899 31.66 precipitation 0.1 270 < th dose independent rect. 17 18
902 31.66 precipitation 0.1 270 < th dose dependent rect. 17 18
908 31.67 temperature 30.0 270 < th dose independent rect. 7 2
923 31.68 atmosphere 1000.0 270 > th dose independent rect. 11 5
933 31.69 humidity 50.0 10 > th dose independent rect. 8 4
973 31.72 temperature 10.0 10 > th dose independent rect. 8 6
975 31.72 atmosphere 995.0 10 > th dose independent rect. 8 6
976 31.72 atmosphere 1015.0 10 < th dose independent rect. 8 6
977 31.72 precipitation 0.1 10 < th dose independent rect. 8 6
991 31.72 temperature 10.0 10 > th dose independent rect. 14 18
994 31.72 precipitation 0.1 10 < th dose dependent rect. 8 6