BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0180900 Os12g0180900|AK110994
         (211 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0180900  Hypothetical protein                                412   e-115

>Os12g0180900 Hypothetical protein
          Length = 211

 Score =  412 bits (1058), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/211 (95%), Positives = 202/211 (95%)

Query: 1   MAVDNILASQNVGTQLRAYPPPIKYFEALLRQEHAELLEYVDDVDRVVAXXXXXXXXXTV 60
           MAVDNILASQNVGTQLRAYPPPIKYFEALLRQEHAELLEYVDDVDRVVA         TV
Sbjct: 1   MAVDNILASQNVGTQLRAYPPPIKYFEALLRQEHAELLEYVDDVDRVVALLKPLPPPKTV 60

Query: 61  RYPVLFERAWGFGRLFPCDVTDESPQYHAYLQEFYRRNCSAPPSVAAAISLCLKNERILR 120
           RYPVLFERAWGFGRLFPCDVTDESPQYHAYLQEFYRRNCSAPPSVAAAISLCLKNERILR
Sbjct: 61  RYPVLFERAWGFGRLFPCDVTDESPQYHAYLQEFYRRNCSAPPSVAAAISLCLKNERILR 120

Query: 121 SEWQNRGVQVHPYNLSLSDNILECASNLVDKMNAESATVAYAALVCVQTLHFHLQHLQFV 180
           SEWQNRGVQVHPYNLSLSDNILECASNLVDKMNAESATVAYAALVCVQTLHFHLQHLQFV
Sbjct: 121 SEWQNRGVQVHPYNLSLSDNILECASNLVDKMNAESATVAYAALVCVQTLHFHLQHLQFV 180

Query: 181 VLKLLITSFAVVCASFAKRWLIPSVSPRRLS 211
           VLKLLITSFAVVCASFAKRWLIPSVSPRRLS
Sbjct: 181 VLKLLITSFAVVCASFAKRWLIPSVSPRRLS 211



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.135    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,041,100
Number of extensions: 249430
Number of successful extensions: 634
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 635
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 115
Effective length of database: 12,023,257
Effective search space: 1382674555
Effective search space used: 1382674555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 154 (63.9 bits)