BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0167700 Os12g0167700|AK059066
         (255 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0167700  Hypothetical protein                                519   e-148

>Os12g0167700 Hypothetical protein
          Length = 255

 Score =  519 bits (1337), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 255/255 (100%), Positives = 255/255 (100%)

Query: 1   MDSCNGQAILEDMPGPKSPEDYQDDSVSGSVGDMFEPSPTERAEQETTLVSPAEMLVFKF 60
           MDSCNGQAILEDMPGPKSPEDYQDDSVSGSVGDMFEPSPTERAEQETTLVSPAEMLVFKF
Sbjct: 1   MDSCNGQAILEDMPGPKSPEDYQDDSVSGSVGDMFEPSPTERAEQETTLVSPAEMLVFKF 60

Query: 61  GQHNNPNLVSVGGHNDSCDEDTADMFSTEPVASNNQHEQELPNDVSAPVSLKESAICQED 120
           GQHNNPNLVSVGGHNDSCDEDTADMFSTEPVASNNQHEQELPNDVSAPVSLKESAICQED
Sbjct: 61  GQHNNPNLVSVGGHNDSCDEDTADMFSTEPVASNNQHEQELPNDVSAPVSLKESAICQED 120

Query: 121 ISVHTESCPGKSLPVPEDISAPKSPEERAIHQDDSVPRSAVLCQTSGRRRIDEISTKLLS 180
           ISVHTESCPGKSLPVPEDISAPKSPEERAIHQDDSVPRSAVLCQTSGRRRIDEISTKLLS
Sbjct: 121 ISVHTESCPGKSLPVPEDISAPKSPEERAIHQDDSVPRSAVLCQTSGRRRIDEISTKLLS 180

Query: 181 FKISSTVKPSHIAMNAPSTKQVDNLSESAIALLRNRENTLAIKTDRPVKPNPDRSVAKNS 240
           FKISSTVKPSHIAMNAPSTKQVDNLSESAIALLRNRENTLAIKTDRPVKPNPDRSVAKNS
Sbjct: 181 FKISSTVKPSHIAMNAPSTKQVDNLSESAIALLRNRENTLAIKTDRPVKPNPDRSVAKNS 240

Query: 241 SRRPLQPIGRRPEGH 255
           SRRPLQPIGRRPEGH
Sbjct: 241 SRRPLQPIGRRPEGH 255



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.308    0.126    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,555,909
Number of extensions: 429460
Number of successful extensions: 1030
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1028
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 156
Effective length of database: 11,866,615
Effective search space: 1851191940
Effective search space used: 1851191940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 155 (64.3 bits)