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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0167700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.87 (0.0414) R2 : 0.148
β1 : -0.565 (0.162) R2dD : 0.0278 R2D : -0.0181
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.34 (0.447) R2dE : 0.0448 R2E : -0.135
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -29.4 (3.91) R2dD*E : 0.291 R2D*E : 0.079
γ1 : 0.0229 (0.0896) R2dN8 : 0.000173 R2N8 : -0.00165
σ : 0.766
deviance : 267.36
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 23.11
memory length : 18
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 12.4
open length of G : 1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
263.21 0.762 2.87 -0.589 0.124 -1.34 -1.1 -29.4 0.0261 19.5 24.62 31 12 0.76
296.28 0.802 2.92 -0.12 0.114 1.25 -1.14 -- 0.022 19 18.95 4 12.5 0.45
265.94 0.765 2.88 -0.567 0.154 -1.28 -- -29.4 0.018 22.3 22.91 18 12.3 0.95
298.94 0.805 2.92 -0.098 0.158 1.33 -- -- 0.0169 22.6 18.08 49 12.6 0.617
267.36 0.766 2.87 -0.565 -- -1.34 -- -29.4 0.0229 -- 23.11 18 12.4 1
307.77 0.822 2.89 -0.112 0.114 -- -1.24 -- 0.122 18.4 -- -- -- --
311.47 0.826 2.9 -0.0977 0.118 -- -- -- 0.117 20 -- -- -- --
300.4 0.807 2.92 -0.0986 -- 1.26 -- -- 0.0192 -- 22.85 39 12 1.33
299.21 0.806 2.92 -- 0.157 1.33 -- -- 0.0207 22.3 18.19 49 12.6 0.617
312.23 0.826 2.89 -0.0988 -- -- -- -- 0.115 -- -- -- -- --
311.72 0.826 2.89 -- 0.119 -- -- -- 0.128 20 -- -- -- --
300.66 0.81 2.91 -- -- 1.27 -- -- 0.029 -- 22.85 39 12 1.33
312.48 0.825 2.89 -- -- -- -- -- 0.126 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 263.21 temperature 10.0 1440 > th dose independent rect. 13 1
5 263.21 atmosphere 995.0 1440 > th dose independent rect. 13 1
8 263.21 temperature 10.0 1440 > th dose independent rect. 14 23
11 263.84 temperature 25.0 30 > th dose dependent rect. 12 1
12 264.09 radiation 40.0 30 > th dose independent rect. 12 1
14 264.51 atmosphere 1005.0 30 > th dose independent rect. 12 1
15 264.90 radiation 30.0 30 > th dose dependent rect. 12 1
22 265.90 wind 3.0 30 > th dose independent rect. 12 1
24 266.40 atmosphere 1000.0 30 > th dose dependent rect. 12 1
25 266.62 wind 1.0 30 > th dose dependent rect. 12 1
28 266.80 humidity 80.0 30 < th dose independent rect. 12 1
30 267.17 temperature 20.0 30 > th dose independent rect. 12 1
31 267.24 wind 7.0 30 < th dose independent rect. 12 1
35 267.68 temperature 10.0 30 > th dose independent rect. 12 1
38 267.68 atmosphere 1015.0 30 < th dose independent rect. 12 1
39 267.68 radiation 1.0 30 > th dose independent rect. 12 1
40 267.68 precipitation 0.1 30 < th dose independent rect. 12 1
41 267.68 temperature 10.0 30 > th dose independent rect. 13 23
42 267.68 precipitation 0.1 30 < th dose dependent rect. 12 1
48 268.05 humidity 60.0 30 > th dose independent rect. 12 1
50 268.98 humidity 90.0 30 < th dose dependent rect. 12 1
55 270.33 wind 9.0 30 < th dose dependent rect. 12 1
56 270.34 humidity 50.0 30 > th dose dependent rect. 12 1
57 270.36 temperature 30.0 30 < th dose independent rect. 12 1
59 271.89 atmosphere 1015.0 30 < th dose dependent rect. 12 1
66 274.70 humidity 90.0 90 > th dose dependent rect. 18 1
75 277.10 temperature 20.0 90 < th dose dependent rect. 17 3
77 277.46 humidity 90.0 90 > th dose dependent rect. 17 3
83 277.98 temperature 20.0 90 < th dose independent rect. 17 3
94 279.89 humidity 90.0 90 > th dose independent rect. 18 1
95 279.97 temperature 20.0 90 < th dose independent rect. 18 1
96 280.06 temperature 20.0 90 < th dose dependent rect. 18 1
97 280.12 atmosphere 995.0 30 > th dose independent rect. 13 23
103 280.44 wind 9.0 30 < th dose independent rect. 13 23
140 281.68 humidity 90.0 270 > th dose dependent rect. 15 4
144 281.80 humidity 90.0 270 > th dose independent rect. 16 1
145 281.80 humidity 90.0 270 > th dose dependent rect. 16 1
158 283.20 humidity 90.0 90 > th dose independent rect. 17 3
185 283.58 wind 1.0 90 < th dose dependent rect. 15 8
215 284.61 temperature 25.0 270 < th dose dependent rect. 16 1
246 284.86 wind 1.0 90 < th dose independent rect. 15 7
257 285.28 atmosphere 1000.0 10 < th dose independent rect. 19 3
262 285.28 atmosphere 1000.0 30 < th dose dependent rect. 19 3
267 285.29 atmosphere 1000.0 90 < th dose independent rect. 20 1
268 285.29 atmosphere 1000.0 10 < th dose independent rect. 21 1
281 285.29 atmosphere 1000.0 90 < th dose dependent rect. 20 1
282 285.29 atmosphere 1000.0 10 < th dose dependent rect. 21 1
392 287.31 wind 1.0 90 < th dose dependent rect. 20 1
431 287.91 temperature 30.0 30 < th dose independent rect. 13 23
487 288.65 precipitation 0.1 30 < th dose independent rect. 13 23
488 288.65 precipitation 0.1 30 < th dose dependent rect. 13 23
500 289.06 wind 1.0 90 < th dose independent rect. 21 1
504 289.09 humidity 50.0 30 > th dose independent rect. 13 23
528 289.30 temperature 30.0 10 > th dose independent rect. 10 3
573 289.80 temperature 30.0 10 > th dose independent rect. 18 19
575 289.81 temperature 30.0 10 < th dose independent rect. 5 23
634 290.43 temperature 30.0 10 > th dose independent rect. 16 21
645 290.61 radiation 40.0 30 < th dose independent sin 13 NA
702 291.54 temperature 30.0 10 < th dose independent sin 22 NA
707 291.60 wind 3.0 10 < th dose independent rect. 15 5
769 292.19 temperature 30.0 10 < th dose independent no NA NA
803 292.37 precipitation 0.1 30 > th dose independent rect. 19 5
814 292.48 precipitation 0.1 30 > th dose dependent rect. 19 5
823 292.52 atmosphere 1005.0 30 > th dose dependent rect. 19 1
839 292.62 humidity 90.0 30 > th dose dependent rect. 8 13
840 292.63 precipitation 0.1 10 > th dose independent rect. 19 1
852 292.63 precipitation 0.1 10 > th dose dependent rect. 19 1
919 292.79 radiation 40.0 10 > th dose independent sin 13 NA
926 292.82 temperature 30.0 10 > th dose independent sin 22 NA
996 293.22 radiation 1.0 270 < th dose independent rect. 16 1